Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 4
- cytosol 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc03g112900.2.1 | |
| Solyc07g007450.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G50420.1 | Solyc03g112900.2.1 | AT4G22220.1 | 21798944 |
| AT1G50420.1 | Solyc07g007450.2.1 | AT4G22220.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400011839 | Potato | cytosol | 97.86 | 97.86 |
| Solyc01g008910.2.1 | Tomato | cytosol | 82.48 | 81.09 |
| VIT_06s0009g02390.t01 | Wine grape | cytosol | 76.28 | 75.32 |
| CDY45059 | Canola | cytosol | 47.86 | 73.68 |
| KRH29080 | Soybean | cytosol | 70.94 | 72.97 |
| KRH24106 | Soybean | cytosol, nucleus, peroxisome | 70.94 | 72.97 |
| CDY68881 | Canola | cytosol | 38.03 | 72.95 |
| Bra018848.1-P | Field mustard | cytosol | 65.81 | 70.0 |
| Bra014251.1-P | Field mustard | cytosol | 66.45 | 69.89 |
| CDY03601 | Canola | cytosol | 65.81 | 68.6 |
| AT1G50420.1 | Thale cress | cytosol | 70.51 | 68.46 |
| CDY22795 | Canola | cytosol, plastid | 64.74 | 68.24 |
| KRH77666 | Soybean | endoplasmic reticulum, nucleus, peroxisome, plastid | 67.31 | 67.74 |
| KRH27822 | Soybean | nucleus, plastid | 68.16 | 67.44 |
| GSMUA_Achr8P09690_001 | Banana | cytosol | 59.83 | 62.78 |
| HORVU3Hr1G106260.1 | Barley | cytosol | 23.72 | 62.01 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, peroxisome, plastid | 61.97 | 61.31 |
| Os01t0948200-00 | Rice | cytosol | 52.56 | 55.66 |
| TraesCS3A01G487500.1 | Wheat | cytosol, plastid | 52.78 | 55.26 |
| TraesCS3B01G535100.1 | Wheat | cytosol | 52.56 | 54.3 |
| Zm00001d042127_P001 | Maize | plastid | 51.5 | 53.91 |
| Zm00001d011881_P001 | Maize | cytosol | 51.71 | 53.9 |
| TraesCS3D01G482600.1 | Wheat | cytosol | 52.35 | 53.85 |
| EES02045 | Sorghum | cytosol, plastid | 51.71 | 52.72 |
| Os06t0211500-00 | Rice | cytosol | 18.16 | 44.5 |
| Os12t0138100-00 | Rice | cytosol | 41.45 | 39.43 |
| Os11t0141500-00 | Rice | cytosol | 41.24 | 39.23 |
| HORVU2Hr1G113490.1 | Barley | cytosol | 26.07 | 38.73 |
| HORVU2Hr1G113480.1 | Barley | cytosol | 26.07 | 38.73 |
| Zm00001d023248_P001 | Maize | cytosol | 41.45 | 38.34 |
| TraesCS2D01G534700.1 | Wheat | cytosol | 25.43 | 37.9 |
| TraesCS6D01G055100.1 | Wheat | cytosol | 25.21 | 37.58 |
| TraesCS5B01G133800.1 | Wheat | mitochondrion | 42.95 | 36.41 |
| HORVU5Hr1G043310.1 | Barley | cytosol | 42.73 | 36.36 |
| TraesCS5A01G135000.1 | Wheat | mitochondrion | 42.73 | 36.04 |
| TraesCS2D01G055700.1 | Wheat | extracellular, golgi, mitochondrion, plastid | 23.93 | 35.9 |
| TraesCS5D01G139500.1 | Wheat | mitochondrion | 42.73 | 35.78 |
| TraesCS4B01G133000.1 | Wheat | cytosol, nucleus, plastid | 11.11 | 35.62 |
| TraesCS2A01G532900.1 | Wheat | cytosol | 32.27 | 35.12 |
| EES16518 | Sorghum | cytosol | 33.55 | 34.89 |
| KXG22822 | Sorghum | mitochondrion | 41.03 | 33.28 |
| TraesCS4A01G185900.1 | Wheat | cytosol | 30.77 | 32.29 |
| EES09233 | Sorghum | cytosol | 33.55 | 32.24 |
| Os11t0141700-00 | Rice | cytosol | 34.83 | 32.21 |
| Os12t0138200-00 | Rice | cytosol | 35.04 | 32.16 |
| HORVU2Hr1G113360.1 | Barley | cytosol | 32.48 | 32.0 |
| TraesCS2B01G562400.1 | Wheat | cytosol | 32.27 | 31.86 |
| HORVU4Hr1G026010.3 | Barley | cytosol | 30.34 | 31.84 |
| CDY37137 | Canola | plastid | 64.74 | 31.76 |
| Solyc07g043330.1.1 | Tomato | plastid | 28.63 | 31.02 |
| OQU77884 | Sorghum | plasma membrane | 30.13 | 30.99 |
| Zm00001d052463_P001 | Maize | cytosol | 34.19 | 30.59 |
| Zm00001d037901_P001 | Maize | cytosol, peroxisome, plastid | 30.13 | 30.52 |
| TraesCS4D01G127800.2 | Wheat | mitochondrion | 30.77 | 30.32 |
| Zm00001d052464_P001 | Maize | cytosol, plasma membrane, plastid | 30.98 | 29.77 |
| TraesCSU01G014000.1 | Wheat | cytosol | 18.59 | 29.59 |
| Solyc07g066250.1.1 | Tomato | nucleus | 26.71 | 29.21 |
| OQU77885 | Sorghum | cytosol | 29.49 | 28.63 |
| Solyc03g110950.1.1 | Tomato | cytosol | 30.56 | 26.98 |
| Zm00001d023247_P001 | Maize | plastid | 31.41 | 26.25 |
| Solyc11g017100.1.1 | Tomato | cytosol | 25.64 | 25.21 |
| Solyc11g011260.1.1 | Tomato | nucleus | 31.41 | 25.0 |
| GSMUA_Achr11P... | Banana | cytosol | 58.55 | 24.86 |
| Os05t0378200-00 | Rice | cytosol | 29.06 | 24.68 |
| Solyc09g066450.1.1 | Tomato | cytosol | 26.07 | 24.4 |
| Solyc10g086380.1.1 | Tomato | nucleus | 26.07 | 23.78 |
| Solyc02g094340.1.1 | Tomato | nucleus | 34.4 | 23.68 |
| Os05t0378500-00 | Rice | plastid | 27.78 | 23.21 |
| Solyc10g086370.1.1 | Tomato | nucleus | 24.15 | 22.16 |
| Solyc08g080400.1.1 | Tomato | plastid | 29.91 | 20.62 |
| Solyc02g085340.1.1 | Tomato | cytosol | 26.07 | 20.03 |
| Solyc10g074680.1.1 | Tomato | cytosol | 32.05 | 18.16 |
| Os12t0138166-00 | Rice | endoplasmic reticulum, extracellular | 1.92 | 2.55 |
| Os11t0141550-01 | Rice | cytosol | 0.21 | 0.78 |
Protein Annotations
| MapMan:15.5.12 | GO:GO:0000989 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0003712 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR005202 | UniProt:K4DI11 | PFAM:PF03514 | PFscan:PS50985 |
| PANTHER:PTHR31636 | PANTHER:PTHR31636:SF13 | InterPro:Scarecrow-like_3 | EnsemblPlantsGene:Solyc12g099900.1 | EnsemblPlants:Solyc12g099900.1.1 | InterPro:TF_GRAS |
| UniParc:UPI000276A9D5 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr12:+:66846300..66847706
Molecular Weight (calculated)
52612.2 Da
IEP (calculated)
6.450
GRAVY (calculated)
-0.211
Length
468 amino acids
Sequence
(BLAST)
(BLAST)
001: MLQDDGSSSV TSSSPIQVFP MMSVSPSFGS SNQWLKELKS EERGLYLIHL LLACANHVAS GSLENANIAL DHISQLASPS GDTMQRIASY FTEALADRIL
101: RSWPGLYKAL RSTKLSVVSE EILVRKMFFE IFPFLKVAFV VTNQAIIEAM EGEKMVHIVD LNAAEPLQWR ALLQDLSARP EGPPHLRITG VHQQKEVLDQ
201: MAHVLTQEAE KLDIPFQFNQ VVSRLENLDV EKLRVKTGEA LAISSIMQLH TLLAHDNDKK SPLPFKHSNG VNLNRALVNQ NTLGEFLEKD MANGCSPSND
301: TASSSPLCST GSTKMDSFLN ALWGLSPKVM VVTEQDANHN GTTLMERLSE SLHFYAALFD CLESTLPRTS LERLKVEKML LGEEIRNIIA CEGIERKERH
401: EKLEKWFQRF DTSGFGNVPL SYYAMLQARR LLQSYSCEGY KIKEDNGCVV ICWQDRPLFS VSSWRCRK
101: RSWPGLYKAL RSTKLSVVSE EILVRKMFFE IFPFLKVAFV VTNQAIIEAM EGEKMVHIVD LNAAEPLQWR ALLQDLSARP EGPPHLRITG VHQQKEVLDQ
201: MAHVLTQEAE KLDIPFQFNQ VVSRLENLDV EKLRVKTGEA LAISSIMQLH TLLAHDNDKK SPLPFKHSNG VNLNRALVNQ NTLGEFLEKD MANGCSPSND
301: TASSSPLCST GSTKMDSFLN ALWGLSPKVM VVTEQDANHN GTTLMERLSE SLHFYAALFD CLESTLPRTS LERLKVEKML LGEEIRNIIA CEGIERKERH
401: EKLEKWFQRF DTSGFGNVPL SYYAMLQARR LLQSYSCEGY KIKEDNGCVV ICWQDRPLFS VSSWRCRK
001: MVAMFQEDNG TSSVASSPLQ VFSTMSLNRP TLLASSSPFH CLKDLKPEER GLYLIHLLLT CANHVASGSL QNANAALEQL SHLASPDGDT MQRIAAYFTE
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK
Arabidopsis Description
SCL3Scarecrow-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPR8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.