Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400049445 | Potato | cytosol | 58.04 | 70.31 |
| Solyc10g086380.1.1 | Tomato | nucleus | 66.86 | 66.47 |
| Solyc11g011260.1.1 | Tomato | nucleus | 45.69 | 39.63 |
| Solyc07g066250.1.1 | Tomato | nucleus | 22.94 | 27.34 |
| Solyc07g043330.1.1 | Tomato | plastid | 21.18 | 25.0 |
| Solyc01g008910.2.1 | Tomato | cytosol | 22.94 | 24.58 |
| Solyc12g099900.1.1 | Tomato | nucleus | 22.16 | 24.15 |
| Solyc09g066450.1.1 | Tomato | cytosol | 23.53 | 24.0 |
| Solyc11g017100.1.1 | Tomato | cytosol | 19.8 | 21.22 |
| Solyc03g110950.1.1 | Tomato | cytosol | 21.57 | 20.75 |
| Solyc02g094340.1.1 | Tomato | nucleus | 26.86 | 20.15 |
| Solyc02g085340.1.1 | Tomato | cytosol | 21.96 | 18.39 |
| Solyc08g080400.1.1 | Tomato | plastid | 23.73 | 17.82 |
| Solyc10g074680.1.1 | Tomato | cytosol | 25.88 | 15.98 |
Protein Annotations
| MapMan:11.6.2.2 | MapMan:15.5.12 | MapMan:26.6.2.1 | GO:GO:0000003 | GO:GO:0000989 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0003712 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0006950 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009628 | GO:GO:0009719 | GO:GO:0009723 | GO:GO:0009737 | GO:GO:0009791 |
| GO:GO:0009863 | GO:GO:0009867 | GO:GO:0009938 | GO:GO:0009987 | GO:GO:0010187 | GO:GO:0042538 |
| GO:GO:0043565 | GO:GO:2000033 | GO:GO:2000377 | InterPro:IPR005202 | UniProt:K4D469 | PFAM:PF03514 |
| PFscan:PS50985 | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF47 | EnsemblPlantsGene:Solyc10g086370.1 | EnsemblPlants:Solyc10g086370.1.1 | InterPro:TF_DELLA |
| InterPro:TF_GRAS | UniParc:UPI00027694C7 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr10:+:65218718..65220250
Molecular Weight (calculated)
56321.5 Da
IEP (calculated)
4.698
GRAVY (calculated)
-0.106
Length
510 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSREISMDT IMEDEDSFVS NTNAIIYAAS DISGWTHSLF SDNNIPNSSS STSVDEHHQQ ISTAAGDGGK EDDSMIVSSS ASSSWFNDNK QIDDHQEIRI
101: FNVDFSSLCN NTCSGFESHG GLLPDTGRTV NGDASVLLVN IIVACAKADK KNYSCLADRL IRNIIRRFEV AQFGGAMKKV ATHFADAFDN KIHRLIPQDI
201: VGLSYNHTSV YGNCLFLKFA HFTANQSILE AFANFNRVHV IDFSFNQGLQ WQALLQALAL RPGGPPAFRL SGISGQPKSD DGSDPLQEVG FKLAQFAESI
301: GVEFEFCGFM AYALADLEAS MLNIRPSNEE AVAVNSVFEL QPLFSIPGAI EKVMDLIKQI EPKVVTITEQ EVNHNGRVFS SRIIEASRYY STMFDFLENL
401: ESISPNNLDT VMEKQCLDVM VSEIYNLVAC EGTKRIVRRG TLGQWQVRIY SAGFNLVPLT SDTYKQGAML LASFPNAEGY KVEVKDGSLM LSWNSLPLIA
501: NSTWRLCSQV
101: FNVDFSSLCN NTCSGFESHG GLLPDTGRTV NGDASVLLVN IIVACAKADK KNYSCLADRL IRNIIRRFEV AQFGGAMKKV ATHFADAFDN KIHRLIPQDI
201: VGLSYNHTSV YGNCLFLKFA HFTANQSILE AFANFNRVHV IDFSFNQGLQ WQALLQALAL RPGGPPAFRL SGISGQPKSD DGSDPLQEVG FKLAQFAESI
301: GVEFEFCGFM AYALADLEAS MLNIRPSNEE AVAVNSVFEL QPLFSIPGAI EKVMDLIKQI EPKVVTITEQ EVNHNGRVFS SRIIEASRYY STMFDFLENL
401: ESISPNNLDT VMEKQCLDVM VSEIYNLVAC EGTKRIVRRG TLGQWQVRIY SAGFNLVPLT SDTYKQGAML LASFPNAEGY KVEVKDGSLM LSWNSLPLIA
501: NSTWRLCSQV
001: MKRDHHQFQG RLSNHGTSSS SSSISKDKMM MVKKEEDGGG NMDDELLAVL GYKVRSSEMA EVALKLEQLE TMMSNVQEDG LSHLATDTVH YNPSELYSWL
101: DNMLSELNPP PLPASSNGLD PVLPSPEICG FPASDYDLKV IPGNAIYQFP AIDSSSSSNN QNKRLKSCSS PDSMVTSTST GTQIGGVIGT TVTTTTTTTT
201: AAGESTRSVI LVDSQENGVR LVHALMACAE AIQQNNLTLA EALVKQIGCL AVSQAGAMRK VATYFAEALA RRIYRLSPPQ NQIDHCLSDT LQMHFYETCP
301: YLKFAHFTAN QAILEAFEGK KRVHVIDFSM NQGLQWPALM QALALREGGP PTFRLTGIGP PAPDNSDHLH EVGCKLAQLA EAIHVEFEYR GFVANSLADL
401: DASMLELRPS DTEAVAVNSV FELHKLLGRP GGIEKVLGVV KQIKPVIFTV VEQESNHNGP VFLDRFTESL HYYSTLFDSL EGVPNSQDKV MSEVYLGKQI
501: CNLVACEGPD RVERHETLSQ WGNRFGSSGL APAHLGSNAF KQASMLLSVF NSGQGYRVEE SNGCLMLGWH TRPLITTSAW KLSTAAY
101: DNMLSELNPP PLPASSNGLD PVLPSPEICG FPASDYDLKV IPGNAIYQFP AIDSSSSSNN QNKRLKSCSS PDSMVTSTST GTQIGGVIGT TVTTTTTTTT
201: AAGESTRSVI LVDSQENGVR LVHALMACAE AIQQNNLTLA EALVKQIGCL AVSQAGAMRK VATYFAEALA RRIYRLSPPQ NQIDHCLSDT LQMHFYETCP
301: YLKFAHFTAN QAILEAFEGK KRVHVIDFSM NQGLQWPALM QALALREGGP PTFRLTGIGP PAPDNSDHLH EVGCKLAQLA EAIHVEFEYR GFVANSLADL
401: DASMLELRPS DTEAVAVNSV FELHKLLGRP GGIEKVLGVV KQIKPVIFTV VEQESNHNGP VFLDRFTESL HYYSTLFDSL EGVPNSQDKV MSEVYLGKQI
501: CNLVACEGPD RVERHETLSQ WGNRFGSSGL APAHLGSNAF KQASMLLSVF NSGQGYRVEE SNGCLMLGWH TRPLITTSAW KLSTAAY
Arabidopsis Description
RGADELLA protein RGA [Source:UniProtKB/Swiss-Prot;Acc:Q9SLH3]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.