Factsheet for Solyc11g011260.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 18250077

extracellular: 29876421

gfp PMID: 18250077 doi

GW Bassel, RT Mullen, JD Bewley

Department of Molecular and Cellular Biology, University of Guelph, Guelph, Ontario, Canada, N1G 2W1. gbassel@csb.utoronto.ca

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g098390.2.1
Solyc02g031710.2.1
Solyc02g069180.2.1
Solyc06g008870.2.1
Solyc07g042170.2.1	nucleus
Solyc08g036620.2.1	nucleus
Solyc08g036640.2.1	nucleus
Solyc08g036660.2.1	nucleus
Solyc09g074270.2.1
Solyc12g009220.1.1	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G66350.1	Solyc01g098390.2.1	AT3G05120.1	16709201
AT1G66350.1	Solyc01g098390.2.1	AT3G05120.1	19500306
AT1G66350.1	Solyc06g008870.2.1	AT3G63010.1	16709201
AT1G66350.1	Solyc09g074270.2.1	AT3G63010.1	16709201
AT1G66350.1	Solyc06g008870.2.1	AT3G63010.1	19500306
AT1G66350.1	Solyc09g074270.2.1	AT3G63010.1	19500306
AT1G66350.1	Solyc02g031710.2.1	AT4G19700.1	23482857
AT1G66350.1	Solyc02g069180.2.1	AT4G19700.1	23482857
AT1G66350.1	Solyc01g098390.2.1	AT5G27320.1	16709201
AT1G66350.1	Solyc01g098390.2.1	AT5G27320.1	19500306
AT1G66350.1	Solyc02g031710.2.1	AT5G45100.1	23482857
AT1G66350.1	Solyc02g069180.2.1	AT5G45100.1	23482857
AT3G03450.1	Solyc01g098390.2.1	AT3G05120.1	16709201
AT3G03450.1	Solyc01g098390.2.1	AT3G05120.1	19500306
AT3G03450.1	Solyc06g008870.2.1	AT3G63010.1	16709201
AT3G03450.1	Solyc09g074270.2.1	AT3G63010.1	16709201
AT3G03450.1	Solyc06g008870.2.1	AT3G63010.1	19500306
AT3G03450.1	Solyc09g074270.2.1	AT3G63010.1	19500306
AT3G03450.1	Solyc02g031710.2.1	AT4G19700.1	23482857
AT3G03450.1	Solyc02g069180.2.1	AT4G19700.1	23482857
AT3G03450.1	Solyc01g098390.2.1	AT5G27320.1	16709201
AT3G03450.1	Solyc01g098390.2.1	AT5G27320.1	19500306
AT3G03450.1	Solyc02g031710.2.1	AT5G45100.1	23482857
AT3G03450.1	Solyc02g069180.2.1	AT5G45100.1	23482857
AT5G17490.1	Solyc07g042170.2.1	AT1G19180.1	22892320
AT5G17490.1	Solyc12g009220.1.1	AT1G19180.1	22892320
AT5G17490.1	Solyc07g042170.2.1	AT1G19180.1	22892320
AT5G17490.1	Solyc12g009220.1.1	AT1G19180.1	22892320
AT5G17490.1	Solyc08g036620.2.1	AT1G30135.1	22892320
AT5G17490.1	Solyc08g036640.2.1	AT1G30135.1	22892320
AT5G17490.1	Solyc08g036660.2.1	AT1G30135.1	22892320
AT5G17490.1	Solyc08g036620.2.1	AT1G30135.1	22892320
AT5G17490.1	Solyc08g036640.2.1	AT1G30135.1	22892320
AT5G17490.1	Solyc08g036660.2.1	AT1G30135.1	22892320
AT5G17490.1	Solyc02g031710.2.1	AT4G19700.1	23482857
AT5G17490.1	Solyc02g069180.2.1	AT4G19700.1	23482857
AT5G17490.1	Solyc02g031710.2.1	AT5G45100.1	23482857
AT5G17490.1	Solyc02g069180.2.1	AT5G45100.1	23482857

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400040589	Potato	nucleus	95.75	95.75
CDY50706	Canola	cytosol, extracellular, plastid	8.67	83.61
CDY43123	Canola	cytosol, extracellular, plastid	8.67	83.61
VIT_14s0006g00640.t01	Wine grape	cytosol	66.16	68.37
Bra039762.1-P	Field mustard	cytosol	54.42	65.57
AT1G66350.1	Thale cress	cytosol	56.8	65.36
KRG97933	Soybean	nucleus	64.63	65.07
KRH30942	Soybean	cytosol	65.14	64.37
CDY70426	Canola	cytosol	55.1	63.91
CDY55037	Canola	cytosol	55.1	63.91
AT3G03450.1	Thale cress	nucleus	57.31	61.61
AT5G17490.1	Thale cress	cytosol	54.08	60.8
CDY38434	Canola	cytosol	52.55	60.59
Bra031991.1-P	Field mustard	cytosol, nucleus, plastid	51.36	59.8
Bra013973.1-P	Field mustard	cytosol	53.23	59.62
CDY16915	Canola	cytosol, nucleus, plastid	53.23	59.62
Solyc10g086380.1.1	Tomato	nucleus	43.54	49.9
CDY43122	Canola	nucleus	35.03	49.4
CDY50707	Canola	cytosol, nucleus, plastid	34.69	49.04
Solyc10g086370.1.1	Tomato	nucleus	39.63	45.69
Solyc12g099900.1.1	Tomato	nucleus	25.0	31.41
Solyc07g066250.1.1	Tomato	nucleus	22.79	31.31
Solyc07g043330.1.1	Tomato	plastid	22.45	30.56
Solyc01g008910.2.1	Tomato	cytosol	24.32	30.04
Solyc09g066450.1.1	Tomato	cytosol	22.79	26.8
Solyc02g094340.1.1	Tomato	nucleus	29.25	25.29
Solyc03g110950.1.1	Tomato	cytosol	22.79	25.28
Solyc11g017100.1.1	Tomato	cytosol	20.24	25.0
Solyc08g080400.1.1	Tomato	plastid	25.85	22.39
Solyc02g085340.1.1	Tomato	cytosol	22.45	21.67
Solyc10g074680.1.1	Tomato	cytosol	27.38	19.49

Protein Annotations

Gene3D:1.10.10.1290	MapMan:11.6.2.2	MapMan:15.5.12	MapMan:26.6.2.1	EMBL:AY269087	InterPro:DELLA_N_sf
GO:GO:0000003	GO:GO:0000989	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0003712	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009719
GO:GO:0009723	GO:GO:0009737	GO:GO:0009740	GO:GO:0009791	GO:GO:0009863	GO:GO:0009867
GO:GO:0009938	GO:GO:0009987	GO:GO:0010187	GO:GO:0042538	GO:GO:0043565	GO:GO:2000033
GO:GO:2000377	InterPro:IPR005202	InterPro:IPR038088	PFAM:PF03514	PFAM:PF12041	PFscan:PS50985
PANTHER:PTHR31636	PANTHER:PTHR31636:SF47	UniProt:Q7Y1B6	SMART:SM01129	EnsemblPlantsGene:Solyc11g011260.1	EnsemblPlants:Solyc11g011260.1.1
InterPro:TF_DELLA	InterPro:TF_DELLA_N	InterPro:TF_GRAS	UniParc:UPI00001A35A8	SEG:seg	:

Description

GAIDELLA protein GAI [Source:UniProtKB/Swiss-Prot;Acc:Q7Y1B6]

Coordinates

chr11:-:4303769..4305535

Molecular Weight (calculated)

64529.2 Da

IEP (calculated)

4.860

GRAVY (calculated)

-0.271

Length

588 amino acids

Sequence
(BLAST)

001: MKRDRDRDRE REKRAFSNGA VSSGKSKIWE EDEEEKPDAG MDELLAVLGY KVKSSDMADV AQKLEQLEMA MGTTMEDGIT HLSTDTVHKN PSDMAGWVQS
101: MLSSISTNFD MCNQENDVLV SGCGSSSSII DFSQNHRTST ISDDDLRAIP GGAVFNSDSN KRHRSTTSSF STTSSSMVTD SSATRPVVLV DSQETGVRLV
201: HTLMACAEAV QQENLTLADQ LVRHIGILAV SQSGAMRKVA TYFAEALARR IYKIYPQDSM ESSYTDVLQM HFYETCPYLK FAHFTANQAI LEAFTGCNKV
301: HVIDFSLKQG MQWPALMQAL ALRPGGPPAF RLTGIGPPQP DNTDALQQVG WKLAQLAETI GVEFEFRGFV ANSLADLDAT ILDIRPSETE AVAINSVFEL
401: HRLLSRPGAI EKVLNSIKQI NPKIVTLVEQ EANHNAGVFI DRFNEALHYY STMFDSLESS GSSSSASPTG ILPQPPVNNQ DLVMSEVYLG RQICNVVACE
501: GSDRVERHET LNQWRVRMNS SGFDPVHLGS NAFKQASMLL ALFAGGDGYR VEENDGCLML GWHTRPLIAT SAWKLLPDSG TGAGEVEL

Best Arabidopsis Sequence Match ( AT1G14920.1 )
(BLAST)

001: MKRDHHHHHH QDKKTMMMNE EDDGNGMDEL LAVLGYKVRS SEMADVAQKL EQLEVMMSNV QEDDLSQLAT ETVHYNPAEL YTWLDSMLTD LNPPSSNAEY
101: DLKAIPGDAI LNQFAIDSAS SSNQGGGGDT YTTNKRLKCS NGVVETTTAT AESTRHVVLV DSQENGVRLV HALLACAEAV QKENLTVAEA LVKQIGFLAV
201: SQIGAMRKVA TYFAEALARR IYRLSPSQSP IDHSLSDTLQ MHFYETCPYL KFAHFTANQA ILEAFQGKKR VHVIDFSMSQ GLQWPALMQA LALRPGGPPV
301: FRLTGIGPPA PDNFDYLHEV GCKLAHLAEA IHVEFEYRGF VANTLADLDA SMLELRPSEI ESVAVNSVFE LHKLLGRPGA IDKVLGVVNQ IKPEIFTVVE
401: QESNHNSPIF LDRFTESLHY YSTLFDSLEG VPSGQDKVMS EVYLGKQICN VVACDGPDRV ERHETLSQWR NRFGSAGFAA AHIGSNAFKQ ASMLLALFNG
501: GEGYRVEESD GCLMLGWHTR PLIATSAWKL STN

Arabidopsis Description

GAIDELLA protein GAI [Source:UniProtKB/Swiss-Prot;Acc:Q9LQT8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.