Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG97933 | Soybean | nucleus | 91.26 | 92.98 |
| VIT_14s0006g00640.t01 | Wine grape | cytosol | 65.38 | 68.37 |
| Bra039762.1-P | Field mustard | cytosol | 55.97 | 68.24 |
| AT1G66350.1 | Thale cress | cytosol | 58.15 | 67.71 |
| CDY55037 | Canola | cytosol | 57.48 | 67.46 |
| CDY70426 | Canola | cytosol | 57.31 | 67.26 |
| AT3G03450.1 | Thale cress | nucleus | 60.34 | 65.63 |
| KRH42544 | Soybean | cytosol, nucleus, plastid | 56.97 | 65.57 |
| Solyc11g011260.1.1 | Tomato | nucleus | 64.37 | 65.14 |
| PGSC0003DMT400040589 | Potato | nucleus | 64.37 | 65.14 |
| KRH58636 | Soybean | nucleus | 56.97 | 64.82 |
| Bra031991.1-P | Field mustard | cytosol, nucleus, plastid | 54.12 | 63.76 |
| CDY16915 | Canola | cytosol, nucleus, plastid | 55.8 | 63.24 |
| CDY38434 | Canola | cytosol | 54.12 | 63.14 |
| Bra013973.1-P | Field mustard | cytosol | 55.46 | 62.86 |
| AT5G17490.1 | Thale cress | cytosol | 54.79 | 62.33 |
| CDY43122 | Canola | nucleus | 38.49 | 54.92 |
| CDY50707 | Canola | cytosol, nucleus, plastid | 37.98 | 54.33 |
| KRG92263 | Soybean | cytosol | 35.13 | 52.38 |
| KRH34544 | Soybean | cytosol | 41.01 | 50.0 |
| KRH54840 | Soybean | cytosol | 42.35 | 49.9 |
| KRH63032 | Soybean | cytosol | 42.02 | 49.7 |
| KRH29015 | Soybean | cytosol | 17.48 | 36.49 |
| KRH29089 | Soybean | mitochondrion | 22.86 | 30.77 |
| KRH34954 | Soybean | cytosol | 20.67 | 30.37 |
| KRH29080 | Soybean | cytosol | 22.52 | 29.45 |
| KRH57194 | Soybean | cytosol | 25.04 | 29.16 |
| KRH24106 | Soybean | cytosol, nucleus, peroxisome | 22.02 | 28.79 |
| KRH44884 | Soybean | cytosol | 20.84 | 28.64 |
| KRH03910 | Soybean | cytosol | 24.71 | 28.6 |
| KRH24117 | Soybean | plastid | 21.34 | 28.54 |
| KRH62871 | Soybean | cytosol | 21.18 | 28.44 |
| KRH29971 | Soybean | cytosol | 21.01 | 28.28 |
| KRH13057 | Soybean | cytosol | 26.22 | 28.11 |
| KRG91825 | Soybean | nucleus | 21.68 | 27.74 |
| KRH77666 | Soybean | endoplasmic reticulum, nucleus, peroxisome, plastid | 21.68 | 27.74 |
| KRH70202 | Soybean | cytosol | 22.02 | 27.52 |
| KRG94590 | Soybean | plastid | 31.43 | 27.46 |
| KRH24039 | Soybean | cytosol | 22.18 | 27.44 |
| KRH08555 | Soybean | cytosol | 21.68 | 27.39 |
| KRH27822 | Soybean | nucleus, plastid | 21.68 | 27.27 |
| KRH06900 | Soybean | plastid | 31.43 | 27.26 |
| KRH19587 | Soybean | cytosol | 23.03 | 26.05 |
| KRH32212 | Soybean | cytosol | 22.35 | 24.77 |
| KRH57249 | Soybean | plastid | 24.71 | 22.14 |
| KRH03976 | Soybean | mitochondrion, nucleus | 24.71 | 21.97 |
| KRH40615 | Soybean | nucleus, plastid | 26.89 | 19.44 |
| KRH00551 | Soybean | nucleus, plastid | 27.06 | 19.12 |
Protein Annotations
| Gene3D:1.10.10.1290 | MapMan:11.6.2.2 | MapMan:15.5.12 | MapMan:26.6.2.1 | EntrezGene:547719 | EMBL:ACUP02007106 |
| ncoils:Coil | InterPro:DELLA_N_sf | EnsemblPlantsGene:GLYMA_11G216500 | GO:GO:0000003 | GO:GO:0000989 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0003712 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0006950 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009628 | GO:GO:0009719 | GO:GO:0009723 | GO:GO:0009737 | GO:GO:0009791 |
| GO:GO:0009863 | GO:GO:0009867 | GO:GO:0009938 | GO:GO:0009987 | GO:GO:0010187 | GO:GO:0042538 |
| GO:GO:0043565 | GO:GO:2000033 | GO:GO:2000377 | UniProt:I1LMC8 | InterPro:IPR005202 | InterPro:IPR038088 |
| EnsemblPlants:KRH30942 | ProteinID:KRH30942 | ProteinID:KRH30942.1 | PFAM:PF03514 | PFAM:PF12041 | PFscan:PS50985 |
| SMART:SM01129 | InterPro:TF_DELLA_N | InterPro:TF_GRAS | UniParc:UPI000211BAFE | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr11:+:31083245..31086253
Molecular Weight (calculated)
64981.7 Da
IEP (calculated)
4.789
GRAVY (calculated)
-0.306
Length
595 amino acids
Sequence
(BLAST)
(BLAST)
001: MKRDHKDSCG GGGAAGGTVK GECSSMQSNG KAKMWEEEQQ QQQQQQQQQQ QQGMDELLAA LGYKVRASDM ADVAQKLEQL EMVMGCAQED GISHLASDTV
101: HYDPTDLYSW VQSMLTELNP EPNNNLDPSS FLIDNNNNII NSTAPVFNDD SEYDLRAIPG IAAYPPPLPQ DNHLDEIETA NNINKRLKPS PAESADSAAS
201: EPTRHVVLVD HQEAGVRLVH TLLACAEAVQ QENLKLADAL VKHVGILAAS QAGAMRKVAS YFAQALARRI YGIFPEETLD SSFSDVLHMH FYESCPYLKF
301: AHFTANQAIL EAFATAGKVH VIDFGLKQGM QWPALMQALA LRPGGPPTFR LTGIGPPQPD NTDALQQVGL KLAQLAQIIG VQFEFRGFVC NSLADLDPNM
401: LEIRPGEAVA VNSVFELHRM LARSGSVDKV LDTVKKINPQ IVTIVEQEAN HNGPGFLDRF TEALHYYSSL FDSLEGSSSS STGLGSPSQD LLMSELYLGR
501: QICNVVAYEG PDRVERHETL TQWRGRLDSA GFDPVHLGSN AFKQASMLLA LFAGGDGYRV EENNGCLMLG WHTRPLIATS AWKLPSSSES SGLTQ
101: HYDPTDLYSW VQSMLTELNP EPNNNLDPSS FLIDNNNNII NSTAPVFNDD SEYDLRAIPG IAAYPPPLPQ DNHLDEIETA NNINKRLKPS PAESADSAAS
201: EPTRHVVLVD HQEAGVRLVH TLLACAEAVQ QENLKLADAL VKHVGILAAS QAGAMRKVAS YFAQALARRI YGIFPEETLD SSFSDVLHMH FYESCPYLKF
301: AHFTANQAIL EAFATAGKVH VIDFGLKQGM QWPALMQALA LRPGGPPTFR LTGIGPPQPD NTDALQQVGL KLAQLAQIIG VQFEFRGFVC NSLADLDPNM
401: LEIRPGEAVA VNSVFELHRM LARSGSVDKV LDTVKKINPQ IVTIVEQEAN HNGPGFLDRF TEALHYYSSL FDSLEGSSSS STGLGSPSQD LLMSELYLGR
501: QICNVVAYEG PDRVERHETL TQWRGRLDSA GFDPVHLGSN AFKQASMLLA LFAGGDGYRV EENNGCLMLG WHTRPLIATS AWKLPSSSES SGLTQ
001: MKRDHHHHHH QDKKTMMMNE EDDGNGMDEL LAVLGYKVRS SEMADVAQKL EQLEVMMSNV QEDDLSQLAT ETVHYNPAEL YTWLDSMLTD LNPPSSNAEY
101: DLKAIPGDAI LNQFAIDSAS SSNQGGGGDT YTTNKRLKCS NGVVETTTAT AESTRHVVLV DSQENGVRLV HALLACAEAV QKENLTVAEA LVKQIGFLAV
201: SQIGAMRKVA TYFAEALARR IYRLSPSQSP IDHSLSDTLQ MHFYETCPYL KFAHFTANQA ILEAFQGKKR VHVIDFSMSQ GLQWPALMQA LALRPGGPPV
301: FRLTGIGPPA PDNFDYLHEV GCKLAHLAEA IHVEFEYRGF VANTLADLDA SMLELRPSEI ESVAVNSVFE LHKLLGRPGA IDKVLGVVNQ IKPEIFTVVE
401: QESNHNSPIF LDRFTESLHY YSTLFDSLEG VPSGQDKVMS EVYLGKQICN VVACDGPDRV ERHETLSQWR NRFGSAGFAA AHIGSNAFKQ ASMLLALFNG
501: GEGYRVEESD GCLMLGWHTR PLIATSAWKL STN
101: DLKAIPGDAI LNQFAIDSAS SSNQGGGGDT YTTNKRLKCS NGVVETTTAT AESTRHVVLV DSQENGVRLV HALLACAEAV QKENLTVAEA LVKQIGFLAV
201: SQIGAMRKVA TYFAEALARR IYRLSPSQSP IDHSLSDTLQ MHFYETCPYL KFAHFTANQA ILEAFQGKKR VHVIDFSMSQ GLQWPALMQA LALRPGGPPV
301: FRLTGIGPPA PDNFDYLHEV GCKLAHLAEA IHVEFEYRGF VANTLADLDA SMLELRPSEI ESVAVNSVFE LHKLLGRPGA IDKVLGVVNQ IKPEIFTVVE
401: QESNHNSPIF LDRFTESLHY YSTLFDSLEG VPSGQDKVMS EVYLGKQICN VVACDGPDRV ERHETLSQWR NRFGSAGFAA AHIGSNAFKQ ASMLLALFNG
501: GEGYRVEESD GCLMLGWHTR PLIATSAWKL STN
Arabidopsis Description
GAIDELLA protein GAI [Source:UniProtKB/Swiss-Prot;Acc:Q9LQT8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.