CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89347
KRG93959
KRG94240
KRG94243
KRG95964
KRH00551
KRH00625
KRH02013
KRH03997
KRH04424
KRH04781
KRH04933
KRH05956
KRH07098
KRH11492
KRH13310
KRH16155
KRH17433
KRH20664
KRH22332
KRH23753
KRH25616
KRH26995
KRH28353
KRH34904
KRH36506
KRH38191
KRH40554
KRH40615
KRH50393
KRH51140
KRH51705
KRH57267
KRH57863
KRH58109
KRH58241
KRH61042
KRH63701
KRH65189
KRH67672
KRH73381
KRH77129

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54220.1	KRH22332	AT1G03840.1	17785527
AT3G54220.1	KRH26995	AT1G03840.1	17785527
AT3G54220.1	KRG93959	AT1G07920.1	19228333
AT3G54220.1	KRH04781	AT1G07920.1	19228333
AT3G54220.1	KRH07098	AT1G07920.1	19228333
AT3G54220.1	KRH34904	AT1G07920.1	19228333
AT3G54220.1	KRH57863	AT1G07920.1	19228333
AT3G54220.1	KRH58241	AT1G07920.1	19228333
AT3G54220.1	KRG93959	AT1G07930.1	19228333
AT3G54220.1	KRH04781	AT1G07930.1	19228333
AT3G54220.1	KRH07098	AT1G07930.1	19228333
AT3G54220.1	KRH34904	AT1G07930.1	19228333
AT3G54220.1	KRH57863	AT1G07930.1	19228333
AT3G54220.1	KRH58241	AT1G07930.1	19228333
AT3G54220.1	KRH25616	AT1G27050.1	19228333
AT3G54220.1	KRH02013	AT1G62360.1	17785527
AT3G54220.1	KRH11492	AT1G62360.1	17785527
AT3G54220.1	KRH36506	AT1G62360.1	17785527
AT3G54220.1	KRH51140	AT1G62360.1	17785527
AT3G54220.1	KRH73381	AT1G62360.1	17785527
AT3G54220.1	KRH23753	AT1G72160.1	19228333
AT3G54220.1	KRH05956	AT1G75750.1	19228333
AT3G54220.1	KRH17433	AT1G75750.1	19228333
AT3G54220.1	KRH51705	AT1G75750.1	19228333
AT3G54220.1	KRH61042	AT1G75750.1	19228333
AT3G54220.1	KRH04933	AT1G78570.1	19228333
AT3G54220.1	KRH16155	AT1G78570.1	19228333
AT3G54220.1	KRG89347	AT2G01540.1	19228333
AT3G54220.1	KRG94240	AT2G01540.1	19228333
AT3G54220.1	KRG94243	AT2G01540.1	19228333
AT3G54220.1	KRH38191	AT2G01540.1	19228333
AT3G54220.1	KRH50393	AT2G01540.1	19228333
AT3G54220.1	KRH00625	AT2G45660.1	19228333
AT3G54220.1	KRH40554	AT2G45660.1	19228333
AT3G54220.1	KRH65189	AT2G45660.1	19228333
AT3G54220.1	KRH13310	AT3G12280.1	22921914
AT3G54220.1	KRH20664	AT3G12280.1	22921914
AT3G54220.1	KRH63701	AT3G12280.1	22921914
AT3G54220.1	KRH00551	AT3G54220.1	17785527
AT3G54220.1	KRH40615	AT3G54220.1	17785527
AT3G54220.1	KRH03997	AT4G11880.1	19228333
AT3G54220.1	KRH57267	AT4G11880.1	19228333
AT3G54220.1	KRH04424	AT4G37650.1	17446396
AT3G54220.1	KRH28353	AT4G37650.1	17446396
AT3G54220.1	KRH58109	AT4G37650.1	17446396
AT3G54220.1	KRH77129	AT4G37650.1	17446396
AT3G54220.1	KRH04424	AT4G37650.1	17785527
AT3G54220.1	KRH28353	AT4G37650.1	17785527
AT3G54220.1	KRH58109	AT4G37650.1	17785527
AT3G54220.1	KRH77129	AT4G37650.1	17785527
AT3G54220.1	KRH04424	AT4G37650.1	18500650
AT3G54220.1	KRH28353	AT4G37650.1	18500650
AT3G54220.1	KRH58109	AT4G37650.1	18500650
AT3G54220.1	KRH77129	AT4G37650.1	18500650
AT3G54220.1	KRH04424	AT4G37650.1	22921914
AT3G54220.1	KRH28353	AT4G37650.1	22921914
AT3G54220.1	KRH58109	AT4G37650.1	22921914
AT3G54220.1	KRH77129	AT4G37650.1	22921914
AT3G54220.1	KRG95964	AT5G03150.1	17785527
AT3G54220.1	KRH67672	AT5G03150.1	17785527

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40615	Soybean	nucleus, plastid	92.28	94.41
Bra007056.1-P	Field mustard	mitochondrion, plastid	31.83	84.81
KXG22896	Sorghum	cytosol, plasma membrane	41.21	65.84
CDX78219	Canola	nucleus, plastid	47.15	65.84
CDX73496	Canola	nucleus, plastid	47.98	64.95
GSMUA_Achr11P...	Banana	plastid	42.87	62.89
AT3G54220.1	Thale cress	nucleus, plastid	47.98	61.87
HORVU5Hr1G045920.2	Barley	cytosol	42.04	60.51
VIT_08s0056g00050.t01	Wine grape	nucleus	54.99	59.21
TraesCS4A01G191300.1	Wheat	cytosol	42.99	58.67
TraesCS5B01G143100.1	Wheat	plastid	43.35	57.21
Os11t0124300-01	Rice	nucleus, plastid	43.94	56.84
TraesCS5A01G144000.1	Wheat	plastid	43.59	56.64
GSMUA_Achr8P09400_001	Banana	cytosol	45.01	56.4
Zm00001d052380_P001	Maize	plastid	44.66	56.29
Os12t0122000-01	Rice	plastid	44.06	56.21
TraesCS5D01G148000.1	Wheat	plastid	43.47	56.05
TraesCS4D01G122000.1	Wheat	plastid	43.82	54.34
TraesCS4B01G124000.1	Wheat	plastid	43.59	54.05
Zm00001d005029_P001	Maize	plastid	43.47	53.98
OQU82754	Sorghum	plastid	45.37	53.73
KRH29089	Soybean	mitochondrion	28.15	53.62
Solyc10g074680.1.1	Tomato	cytosol	51.31	52.3
PGSC0003DMT400043358	Potato	cytosol	51.19	52.18
GSMUA_Achr5P21440_001	Banana	nucleus, plastid	43.71	52.05
KRH24117	Soybean	plastid	26.84	50.79
KRH19587	Soybean	cytosol	24.82	39.73
KRH32212	Soybean	cytosol	24.47	38.36
KRH29015	Soybean	cytosol	12.71	37.54
KRG92263	Soybean	cytosol	16.39	34.59
KRH34954	Soybean	cytosol	16.15	33.58
KRH24106	Soybean	cytosol, nucleus, peroxisome	16.63	30.77
KRH29080	Soybean	cytosol	16.51	30.55
KRH34544	Soybean	cytosol	17.58	30.33
KRG91825	Soybean	nucleus	16.63	30.11
KRH70202	Soybean	cytosol	16.98	30.04
KRH63032	Soybean	cytosol	17.81	29.82
KRH08555	Soybean	cytosol	16.63	29.72
KRH54840	Soybean	cytosol	17.81	29.7
KRH29971	Soybean	cytosol	15.44	29.41
KRH77666	Soybean	endoplasmic reticulum, nucleus, peroxisome, plastid	15.8	28.6
KRH42544	Soybean	cytosol, nucleus, plastid	17.34	28.24
KRH62871	Soybean	cytosol	14.85	28.22
KRH27822	Soybean	nucleus, plastid	15.68	27.91
KRH57194	Soybean	cytosol	16.86	27.79
KRG97933	Soybean	nucleus	19.12	27.57
KRH58636	Soybean	nucleus	17.1	27.53
KRH24039	Soybean	cytosol	15.68	27.44
KRH30942	Soybean	cytosol	19.12	27.06
KRG94590	Soybean	plastid	21.14	26.14
KRH03910	Soybean	cytosol	15.91	26.07
KRH06900	Soybean	plastid	21.14	25.95
KRH13057	Soybean	cytosol	16.98	25.77
KRH44884	Soybean	cytosol	12.59	24.48
KRH57249	Soybean	plastid	19.12	24.25
KRH03976	Soybean	mitochondrion, nucleus	18.65	23.47

Protein Annotations

EntrezGene:100806779	MapMan:15.5.12	MapMan:26.3.1.5	EMBL:ACUP02011453	EnsemblPlantsGene:GLYMA_18G220100	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008356	GO:GO:0009058	GO:GO:0009605	GO:GO:0009606
GO:GO:0009628	GO:GO:0009630	GO:GO:0009956	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565
GO:GO:0048366	GO:GO:0051457	GO:GO:0090610	InterPro:IPR005202	UniProt:K7MTY7	EnsemblPlants:KRH00551
ProteinID:KRH00551	ProteinID:KRH00551.1	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF12
InterPro:TF_GRAS	UniParc:UPI000233EB0D	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr18:+:50708694..50712773

Molecular Weight (calculated)

91549.0 Da

IEP (calculated)

6.676

GRAVY (calculated)

-0.425

Length

842 amino acids

Sequence
(BLAST)

001: MAACALFSAG GNITEDGNVN GSGSASSTPL TSASNSSSMS NEEKKHNLHG GGIMPQPHCE RKMVRKRMAS EMEVNVHATP PHNSSSTTSD YPRFPRRSST
101: NMNMLEKGST STTTATTTTL AEGTCNNNNN NNNNNNNSNC SSYHYNNSNN SNSGNISSRD NVAIPNYPTV TVTTNYSTML LPSSTTTTIN SSGVAPNYIT
201: HHQHHHFQGL VESQDHQQNP VPAVCGFSGL PLFPSQSQRN RDSNNTPTTN NIRNSGGNIV DVVASSSSSS SMDDTSAAAA TSGWIDGILK DLIHSSNSVS
301: IPQLISNVRE IIYPCNPNLA MVLEYRLRLL LTESTTQNKR GTEGVPLPPS VSSVKLTSNR VVDGIVPNLH FTDASGGAVV VNQHMLSNWG VPQITHHHDN
401: NTNTNTNNSN NPSVSLVTLP SPTPPLPPPH YSPPQEKHPQ EEDLAATSTA EVALSRKKKE ELREQKKKDE EGLHLLTLLL QCAEAVSSEN LEDANKMLLE
501: ISQLSTPFGT SAQRVAAYFS EAISARLVSS CLGIYATLPH THQSHKVASA FQVFNGISPF VKFSHFTANQ AIQEAFEREE RVHIIDLDIM QGLQWPGLFH
601: ILASRPGGAP YVRLTGLGTS MEALEATGKR LSDFANKLGL PFEFFPVAEK VGNLDPERLN VCKTEAVAVH WLQHSLYDVT GSDTNTLWLL QRLAPKVVTV
701: VEQDLSNTGS FLGRFVEAIH YYSALFDSLG SSYGEESEER HVVEQQLLSR EIRNVLAVGG PSRTGEPKFH NWREKLQQCG FRGISLAGNA ATQASLLLGM
801: FPSEGYTLVE DNGILKLGWK DLCLLTASAW RPPFHSAITH HN

Best Arabidopsis Sequence Match ( AT3G54220.1 )
(BLAST)

001: MAESGDFNGG QPPPHSPLRT TSSGSSSSNN RGPPPPPPPP LVMVRKRLAS EMSSNPDYNN SSRPPRRVSH LLDSNYNTVT PQQPPSLTAA ATVSSQPNPP
101: LSVCGFSGLP VFPSDRGGRN VMMSVQPMDQ DSSSSSASPT VWVDAIIRDL IHSSTSVSIP QLIQNVRDII FPCNPNLGAL LEYRLRSLML LDPSSSSDPS
201: PQTFEPLYQI SNNPSPPQQQ QQHQQQQQQH KPPPPPIQQQ ERENSSTDAP PQPETVTATV PAVQTNTAEA LRERKEEIKR QKQDEEGLHL LTLLLQCAEA
301: VSADNLEEAN KLLLEISQLS TPYGTSAQRV AAYFSEAMSA RLLNSCLGIY AALPSRWMPQ THSLKMVSAF QVFNGISPLV KFSHFTANQA IQEAFEKEDS
401: VHIIDLDIMQ GLQWPGLFHI LASRPGGPPH VRLTGLGTSM EALQATGKRL SDFADKLGLP FEFCPLAEKV GNLDTERLNV RKREAVAVHW LQHSLYDVTG
501: SDAHTLWLLQ RLAPKVVTVV EQDLSHAGSF LGRFVEAIHY YSALFDSLGA SYGEESEERH VVEQQLLSKE IRNVLAVGGP SRSGEVKFES WREKMQQCGF
601: KGISLAGNAA TQATLLLGMF PSDGYTLVDD NGTLKLGWKD LSLLTASAWT PRS

Arabidopsis Description

SCRProtein SCARECROW [Source:UniProtKB/Swiss-Prot;Acc:Q9M384]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.