CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG90996	nucleus
KRG99255	nucleus
KRH04529	nucleus
KRH07603	nucleus
KRH22237
KRH27099
KRH28363	nucleus
KRH28424	nucleus
KRH31935
KRH35760	nucleus
KRH45743	nucleus
KRH51709	nucleus
KRH57973	nucleus
KRH61047	nucleus
KRH69067
KRH69476	nucleus
KRH71094	nucleus
KRH71526
KRH74675	nucleus
KRH75571	nucleus
KRH77050	nucleus
KRH77118	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G12280.1	KRH07603	AT1G47870.1	20407024
AT3G12280.1	KRH51709	AT1G47870.1	20407024
AT3G12280.1	KRH61047	AT1G47870.1	20407024
AT3G12280.1	KRH07603	AT1G47870.1	20706207
AT3G12280.1	KRH51709	AT1G47870.1	20706207
AT3G12280.1	KRH61047	AT1G47870.1	20706207
AT3G12280.1	KRG99255	AT1G70210.1	20407024
AT3G12280.1	KRH45743	AT1G70210.1	20407024
AT3G12280.1	KRH69476	AT1G70210.1	20407024
AT3G12280.1	KRH74675	AT1G70210.1	20407024
AT3G12280.1	KRH22237	AT3G20740.1	15221456
AT3G12280.1	KRH27099	AT3G20740.1	15221456
AT3G12280.1	KRH31935	AT3G20740.1	15221456
AT3G12280.1	KRH71526	AT3G20740.1	15221456
AT3G12280.1	KRH22237	AT3G20740.1	18812497
AT3G12280.1	KRH27099	AT3G20740.1	18812497
AT3G12280.1	KRH31935	AT3G20740.1	18812497
AT3G12280.1	KRH71526	AT3G20740.1	18812497
AT3G12280.1	KRH71094	AT3G24140.1	24571519
AT3G12280.1	KRH75571	AT3G24140.1	24571519
AT3G12280.1	KRH04529	AT3G50070.1	20407024
AT3G12280.1	KRH28424	AT3G50070.1	20407024
AT3G12280.1	KRH57973	AT3G50070.1	20407024
AT3G12280.1	KRH77050	AT3G50070.1	20407024
AT3G12280.1	KRH69067	AT3G55760.1	20706207
AT3G12280.1	KRG90996	AT4G34160.1	20407024
AT3G12280.1	KRH35760	AT4G34160.1	20407024
AT3G12280.1	KRH28363	AT4G37630.1	20407024
AT3G12280.1	KRH77118	AT4G37630.1	20407024

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH20664	Soybean	nucleus	97.01	96.15
KRH63701	Soybean	nucleus	95.72	94.87
VIT_04s0008g02780.t01	Wine grape	nucleus	76.82	76.74
PGSC0003DMT400030280	Potato	nucleus	71.94	71.16
Solyc09g091280.2.1	Tomato	cytosol	71.34	70.43
AT3G12280.1	Thale cress	nucleus	70.35	69.79
CDY08440	Canola	nucleus	70.45	69.69
Bra034764.1-P	Field mustard	nucleus	70.35	69.59
CDY52614	Canola	cytosol	69.55	69.35
CDY42141	Canola	cytosol	69.75	68.93
CDY50559	Canola	nucleus	69.45	68.77
Bra038707.1-P	Field mustard	nucleus	69.25	68.3
CDX73827	Canola	nucleus	67.56	67.16
Bra001446.1-P	Field mustard	nucleus	67.66	66.21
GSMUA_Achr8P00470_001	Banana	nucleus	64.48	64.48
Os08t0538700-01	Rice	nucleus	62.89	62.57
CDY00765	Canola	mitochondrion	68.66	61.83
EES14166	Sorghum	nucleus	61.99	61.56
Zm00001d052695_P016	Maize	nucleus	60.4	60.28
Zm00001d031678_P003	Maize	cytosol, nucleus, plastid	61.19	60.12
TraesCS7A01G264800.1	Wheat	nucleus	60.4	59.45
TraesCS7B01G162700.4	Wheat	nucleus, plastid	60.3	59.35
TraesCS7D01G265600.3	Wheat	nucleus	60.3	58.89
HORVU7Hr1G055440.9	Barley	plastid	60.2	56.86
GSMUA_Achr6P08220_001	Banana	nucleus	55.22	55.44
Os11t0533500-01	Rice	nucleus	50.15	51.53
Zm00001d007407_P006	Maize	cytosol, nucleus, plastid	43.98	50.63
TraesCS4A01G143200.1	Wheat	plastid	48.76	49.95
TraesCS4D01G159600.1	Wheat	cytosol, nucleus, plastid	48.56	49.75
TraesCS4B01G162200.1	Wheat	nucleus	48.36	49.54
OQU83580	Sorghum	plastid	42.79	49.54
HORVU4Hr1G039890.2	Barley	cytosol, nucleus, plastid	48.16	49.39
KXG21076	Sorghum	plastid	42.59	48.86
CDY52391	Canola	nucleus	10.85	47.19
Zm00001d052666_P014	Maize	nucleus	42.89	46.75
KXG26019	Sorghum	cytosol	11.74	43.87

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:100779266	MapMan:13.1.2.1	EMBL:ACUP02009689	ncoils:Coil	InterPro:Cyclin-like_sf
EnsemblPlantsGene:GLYMA_15G230300	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0006915	GO:GO:0007049
GO:GO:0008134	GO:GO:0008150	GO:GO:0008152	GO:GO:0008219	GO:GO:0008285	GO:GO:0009058
GO:GO:0009987	GO:GO:0035189	GO:GO:0045892	GO:GO:0051726	GO:GO:2000134	UniProt:I1MIM1
EnsemblPlants:KRH13310	ProteinID:KRH13310	ProteinID:KRH13310.1	PFAM:PF01857	PFAM:PF01858	PFAM:PF11934
PANTHER:PTHR13742	PANTHER:PTHR13742:SF17	InterPro:RB1	InterPro:RB_A	InterPro:RB_B	InterPro:RB_N
InterPro:RB_fam	SMART:SM01367	SMART:SM01368	SUPFAM:SSF47954	UniParc:UPI00023D7E6A	SEG:seg

Description

hypothetical protein

Coordinates

chr15:+:43139237..43147319

Molecular Weight (calculated)

112120.0 Da

IEP (calculated)

8.461

GRAVY (calculated)

-0.281

Length

1005 amino acids

Sequence
(BLAST)

0001: MEDGKPMNGG DQVESRFVEF CKNGLALEEK SCKKAKNLFG ETKHILLSNF SSMGNGTSEE AERYWFAFIL YSVKKLIQKN EEGGKEDAEN TGLSLCRILR
0101: AAKLNIADFF KELPQFVVKA GPTLSNLYGT DWENRLEAKE MHANAIHLKI LSKYYKRVFG EFFVSTDTNA EKNSSITVHA SEYHRFGWLL FLALRVHAFS
0201: RFKDLVTCTN GLISILAILI IHVPTRFRNF NIHDSSRFVK KSNKGVDLLA SLCNIYNTSE DELRKTMEKA NNVIADILKK QPCLASECET ENLENIDKDG
0301: LTYFKDLMEE SSLPSSLNML EKDYDYMIRN KSELDERLFI NEDDSLLASV SLSGGSVSVG GVKRKFDSMA SPAKTITSPL SPHRSPTSHT NGIPGSANSK
0401: MAATPVSTAM TTAKWLRTVI SPLPSKPSPE LERFLTSCDR DVTSDVVRRA QIILQAIFPS SPLGERCVTG SLQSANLMDN IWAEQRRLEA LKLYYRVLEA
0501: MCRAEAQVFH ATNLTSLLTN ERFHRCMLAC SAELVLATHK TVTMLFPAVL ERTGITAFDL SKVIESFIRH EESLPRELRR HLNSLEERLL ESMVWEKGSS
0601: MYNSLAVARP SLSAEINRLG LLAEPMPSLD EIAMHINFSC GGLPPVPTLP KLESSPTQNG DIRSPKRNVL MERNSFTSPV KDRLLPFNSL KSKLPPPPLQ
0701: SAFASPTKPN PGGGGETCAE TGINIFFGKI IKLGAVRISG MVERLQLSQQ IRENVYCLFQ RILNQWTSLF FNHHIDQIIL CCFYGVAKIS QLNLTFKEIV
0801: YNYRKQPHCK TQVFRSVFVD WSLARRNGRT GQDHVDIITF YNEIFIPSVK PLLVELGPAG PTPKSDRIPE VNNKNEGHLA QCPGSPKISP FPTLPDMSPK
0901: KVSATHNVYV SPLRSSKMEA LISHSSKSYY ACVGESTHAY QSPSKDLTAI NNRLNGNRKV RGPLNFDDVD VGLVSDSMVA NSLYLQNGSC ASSSGAPLKS
1001: EQPDS

Best Arabidopsis Sequence Match ( AT3G12280.2 )
(BLAST)

0001: MEEVQPPVTP PIEPNGKRSE ASLLDICEKV LSLDGSTCDE ALKLFTETKR ILSASMSNIG SGTREEVERF WFAFILYSVK RLSVRKEADG LSVSGDNEFN
0101: LCQILRALKL NIVDFFKELP QFVVKAGSVL GELYGADWEN RLQAKEVQAN FVHLSLLSKY YKRGFREFFL TYDANAEKNS ANSSTYLLDS YRFGWLLFLA
0201: LRNHAFSRFK DLVTCSNGVV SILAILIIHV PCRFRNFSIQ DSSRFVKKGD KGVDLVASLC KIYDASEDEL RIVIDKANNL VETILKKKPS PASECQTDKL
0301: DNIDPDGLTY FEDLLEETSI STSLITLEKD YYDGKGELDE RVFINEEDSL LGSGSLSAGA VNITGVKRKI DALSSPARTF ISPLSPHKSP AAKTNGISGA
0401: TKLAATPVST AMTTAKWLRT VISPLLPKPS PGLEHFLKSC DRDITNDVTR RAHIILEAIF PNSSLGAQCG GGSLQAVDLM DDIWAEQRRL EACKLYYRVL
0501: EAMCKAEAQI LHANNLNSLL TNERFHRCML ACSAELVLAT HKTITMLFPA VLERTGITAF DLSKVIESFI RHEDSLPREL RRHLNSLEER LLESMVWEKG
0601: SSMYNSLIVA RPSLALEINQ LGLLAEPMPS LDAIAALINF SDGANHASSV QKHETCPGQN GGIRSPKRLC TDYRSILVER NSFTSPVKDR LLALGNVKSK
0701: MLPPPLQSAF ASPTRPNPGG GGETCAETGI NIFFTKINKL AAVRINGMVE RLQLSQQIRE SVYCFFQHVL AQRTSLLFSR HIDQIILCCF YGVAKISQMS
0801: LTFREIIYNY RKQPQCKPLV FRSVYVDALQ CRRQGRIGPD HVDIITFYNE IFIPAVKPLL VELGPVRNDR AVEANNKPEG QCPGSPKVSV FPSVPDMSPK
0901: KVSAVHNVYV SPLRGSKMDA LISHSTKSYY ACVGESTHAY QSPSKDLSAI NNRLNNSSNR KRTLNFDAEA GMVSDSMVAN SLNLQNQNQN QNGSDASSSG
1001: GAAPLKTEPT DS

Arabidopsis Description

RBR1RBR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VFS5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.