Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os03t0203800-01 | nucleus |
| Os03t0617500-01 | nucleus |
| Os04t0112200-00 | nucleus |
| Os05t0586300-00 | nucleus |
| Os06t0236600-00 | nucleus |
| Os08t0137100-01 | |
| Os08t0137250-01 | |
| Os09t0111100-01 | nucleus, nucleus |
| Os09t0382300-00 | nucleus |
| Os11t0586300-01 | |
| Os12t0588800-01 | nucleus |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES14166 | Sorghum | nucleus | 85.74 | 85.57 |
| Zm00001d031678_P003 | Maize | cytosol, nucleus, plastid | 84.85 | 83.77 |
| Zm00001d052695_P016 | Maize | nucleus | 82.57 | 82.82 |
| TraesCS7B01G162700.4 | Wheat | nucleus, plastid | 83.17 | 82.27 |
| TraesCS7A01G264800.1 | Wheat | nucleus | 83.17 | 82.27 |
| TraesCS7D01G265600.3 | Wheat | nucleus | 82.87 | 81.34 |
| HORVU7Hr1G055440.9 | Barley | plastid | 83.37 | 79.14 |
| GSMUA_Achr8P00470_001 | Banana | nucleus | 70.2 | 70.55 |
| VIT_04s0008g02780.t01 | Wine grape | nucleus | 63.37 | 63.62 |
| KRH13310 | Soybean | nucleus | 62.57 | 62.89 |
| KRH20664 | Soybean | nucleus | 62.87 | 62.62 |
| KRH63701 | Soybean | nucleus | 62.48 | 62.23 |
| PGSC0003DMT400030280 | Potato | nucleus | 62.08 | 61.71 |
| Solyc09g091280.2.1 | Tomato | cytosol | 61.78 | 61.3 |
| AT3G12280.1 | Thale cress | nucleus | 60.59 | 60.41 |
| CDY08440 | Canola | nucleus | 60.2 | 59.84 |
| Bra034764.1-P | Field mustard | nucleus | 60.1 | 59.74 |
| CDY52614 | Canola | cytosol | 59.6 | 59.72 |
| CDY42141 | Canola | cytosol | 59.9 | 59.49 |
| CDY50559 | Canola | nucleus | 59.21 | 58.92 |
| Bra038707.1-P | Field mustard | nucleus | 59.31 | 58.78 |
| CDX73827 | Canola | nucleus | 58.22 | 58.16 |
| Bra001446.1-P | Field mustard | nucleus | 57.82 | 56.86 |
| CDY00765 | Canola | mitochondrion | 58.42 | 52.87 |
| VIT_14s0068g00840.t01 | Wine grape | cytosol | 30.59 | 52.55 |
| Os11t0533500-01 | Rice | nucleus | 50.69 | 52.35 |
| CDY52391 | Canola | nucleus | 10.2 | 44.59 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.2.1 | EntrezGene:4346176 | EMBL:AK240830 | EMBL:AK241627 | EMBL:AY941774 |
| ProteinID:BAC75848.1 | ProteinID:BAF24286.2 | ProteinID:BAT06468.1 | ncoils:Coil | InterPro:Cyclin-like_sf | ProteinID:EAZ13004.1 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0006357 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0051726 | EnsemblPlantsGene:Os08g0538700 | EnsemblPlants:Os08t0538700-01 | PFAM:PF01857 | PFAM:PF01858 |
| PFAM:PF08934 | PFAM:PF11934 | PANTHER:PTHR13742 | PANTHER:PTHR13742:SF22 | UniProt:Q84QM3 | InterPro:RBR |
| InterPro:RB_A | InterPro:RB_B | InterPro:RB_C | InterPro:RB_N | InterPro:RB_fam | SMART:SM01367 |
| SMART:SM01368 | SMART:SM01369 | SUPFAM:SSF47954 | UniParc:UPI000018FC47 | RefSeq:XP_015648673.1 | SEG:seg |
Description
retinoblastoma protein homolog 2, etinoblastoma-related 2, retinoblastoma-related protein-1Retinoblastoma-related protein. (Os08t0538700-01);Retinoblastoma-related protein. (Os08t0538700-02)
Coordinates
chr8:-:26922222..26928300
Molecular Weight (calculated)
111485.0 Da
IEP (calculated)
8.735
GRAVY (calculated)
-0.213
Length
1010 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEGAAPPASS GSEVTGAGSG KVDAGGGAAM EERFADLCKS KLGLDESITR QAMQLFKESK SILLSSMSSL GSGSPEEIER FWSAFVLYCV SRLGKAGKGK
0101: EDGGISLCQI LRAFSLNIVD FFKEMPQFCI KVGSVLAGLY GSDWEKRLEL KELQANVVHL SLLSRYYKRA YQELFLLNDA KPPENSAEPN AQASDYYRFG
0201: WLLFLVLRIQ TFSRFKDLVT STNGLVSVLA VLIVHIPVRL RNFNIKESSS FAKKSDKGVN LIASLCEKYH TSEDELSKAI EKTNTLIVDI LKKKPCPAAS
0301: ECQQDRLSFI DPEGLTYFKN LLEEDSLKLS LLMLEKEYEN AINTKGELDE RMFANDEDSL LGSGSLSGGA INLPGTKRKY DVMASPAKSI TSPSPMSPPR
0401: FCASPTGNGY CSSKMAPITP VSTAMTTAKW LRSTISPLPS KPSGELLRFF SACDKDVTDD ITRRAGIILG AIFTSSSFGE RICTSVRSTN RIDAIWTEQR
0501: KMEALKLYYR VLESMCRAET QILSGNNLTS LLSNERFHRC MIACSAELVL ATHKTVTMMF PAVLEKTGIT AFDLSKVIES FVRHEDTLPR ELKRHLNSLE
0601: ERLLESMAWE KGSSMYNSLI VARPTLSAEI NRLGLLAEPM PSLDAIAAHH NISLEGLPPL PFQKQEHSPD KDEVRSPKRA CTERRNVLVD NNSFRSPVKD
0701: TLKSKLPPLQ SAFLSPTRPN PAAGGELCAE TGIGVFLSKI AKLAAIRIRG LCERLQLSQQ VLERVYSLVQ QIIIQQTALF FNRHIDQIIL CSIYGVAKIS
0801: QLALTFKEII FGYRKQSQCK PQVFRSVYVH WASRSRNGKT GEDHVDIITF YNEVFIPTVK PLLVELGSGT SPNKKNEEKC AADGPYPESP RLSRFPNLPD
0901: MSPKKVSAAH NVYVSPLRTS KMDTLLSPSS KSYYACVGES THAFQSPSKD LKVINNRLNS GKKVSGRLNF DVVSDLVVAR SLSDQNSASA AATTADIATK
1001: TPVKLEQPDC
0101: EDGGISLCQI LRAFSLNIVD FFKEMPQFCI KVGSVLAGLY GSDWEKRLEL KELQANVVHL SLLSRYYKRA YQELFLLNDA KPPENSAEPN AQASDYYRFG
0201: WLLFLVLRIQ TFSRFKDLVT STNGLVSVLA VLIVHIPVRL RNFNIKESSS FAKKSDKGVN LIASLCEKYH TSEDELSKAI EKTNTLIVDI LKKKPCPAAS
0301: ECQQDRLSFI DPEGLTYFKN LLEEDSLKLS LLMLEKEYEN AINTKGELDE RMFANDEDSL LGSGSLSGGA INLPGTKRKY DVMASPAKSI TSPSPMSPPR
0401: FCASPTGNGY CSSKMAPITP VSTAMTTAKW LRSTISPLPS KPSGELLRFF SACDKDVTDD ITRRAGIILG AIFTSSSFGE RICTSVRSTN RIDAIWTEQR
0501: KMEALKLYYR VLESMCRAET QILSGNNLTS LLSNERFHRC MIACSAELVL ATHKTVTMMF PAVLEKTGIT AFDLSKVIES FVRHEDTLPR ELKRHLNSLE
0601: ERLLESMAWE KGSSMYNSLI VARPTLSAEI NRLGLLAEPM PSLDAIAAHH NISLEGLPPL PFQKQEHSPD KDEVRSPKRA CTERRNVLVD NNSFRSPVKD
0701: TLKSKLPPLQ SAFLSPTRPN PAAGGELCAE TGIGVFLSKI AKLAAIRIRG LCERLQLSQQ VLERVYSLVQ QIIIQQTALF FNRHIDQIIL CSIYGVAKIS
0801: QLALTFKEII FGYRKQSQCK PQVFRSVYVH WASRSRNGKT GEDHVDIITF YNEVFIPTVK PLLVELGSGT SPNKKNEEKC AADGPYPESP RLSRFPNLPD
0901: MSPKKVSAAH NVYVSPLRTS KMDTLLSPSS KSYYACVGES THAFQSPSKD LKVINNRLNS GKKVSGRLNF DVVSDLVVAR SLSDQNSASA AATTADIATK
1001: TPVKLEQPDC
0001: MEEVQPPVTP PIEPNGKRSE ASLLDICEKV LSLDGSTCDE ALKLFTETKR ILSASMSNIG SGTREEVERF WFAFILYSVK RLSVRKEADG LSVSGDNEFN
0101: LCQILRALKL NIVDFFKELP QFVVKAGSVL GELYGADWEN RLQAKEVQAN FVHLSLLSKY YKRGFREFFL TYDANAEKNS ANSSTYLLDS YRFGWLLFLA
0201: LRNHAFSRFK DLVTCSNGVV SILAILIIHV PCRFRNFSIQ DSSRFVKKGD KGVDLVASLC KIYDASEDEL RIVIDKANNL VETILKKKPS PASECQTDKL
0301: DNIDPDGLTY FEDLLEETSI STSLITLEKD YYDGKGELDE RVFINEEDSL LGSGSLSAGA VNITGVKRKI DALSSPARTF ISPLSPHKSP AAKTNGISGA
0401: TKLAATPVST AMTTAKWLRT VISPLLPKPS PGLEHFLKSC DRDITNDVTR RAHIILEAIF PNSSLGAQCG GGSLQAVDLM DDIWAEQRRL EACKLYYRVL
0501: EAMCKAEAQI LHANNLNSLL TNERFHRCML ACSAELVLAT HKTITMLFPA VLERTGITAF DLSKVIESFI RHEDSLPREL RRHLNSLEER LLESMVWEKG
0601: SSMYNSLIVA RPSLALEINQ LGLLAEPMPS LDAIAALINF SDGANHASSV QKHETCPGQN GGIRSPKRLC TDYRSILVER NSFTSPVKDR LLALGNVKSK
0701: MLPPPLQSAF ASPTRPNPGG GGETCAETGI NIFFTKINKL AAVRINGMVE RLQLSQQIRE SVYCFFQHVL AQRTSLLFSR HIDQIILCCF YGVAKISQMS
0801: LTFREIIYNY RKQPQCKPLV FRSVYVDALQ CRRQGRIGPD HVDIITFYNE IFIPAVKPLL VELGPVRNDR AVEANNKPEG QCPGSPKVSV FPSVPDMSPK
0901: KVSAVHNVYV SPLRGSKMDA LISHSTKSYY ACVGESTHAY QSPSKDLSAI NNRLNNSSNR KRTLNFDAEA GMVSDSMVAN SLNLQNQNQN QNGSDASSSG
1001: GAAPLKTEPT DS
0101: LCQILRALKL NIVDFFKELP QFVVKAGSVL GELYGADWEN RLQAKEVQAN FVHLSLLSKY YKRGFREFFL TYDANAEKNS ANSSTYLLDS YRFGWLLFLA
0201: LRNHAFSRFK DLVTCSNGVV SILAILIIHV PCRFRNFSIQ DSSRFVKKGD KGVDLVASLC KIYDASEDEL RIVIDKANNL VETILKKKPS PASECQTDKL
0301: DNIDPDGLTY FEDLLEETSI STSLITLEKD YYDGKGELDE RVFINEEDSL LGSGSLSAGA VNITGVKRKI DALSSPARTF ISPLSPHKSP AAKTNGISGA
0401: TKLAATPVST AMTTAKWLRT VISPLLPKPS PGLEHFLKSC DRDITNDVTR RAHIILEAIF PNSSLGAQCG GGSLQAVDLM DDIWAEQRRL EACKLYYRVL
0501: EAMCKAEAQI LHANNLNSLL TNERFHRCML ACSAELVLAT HKTITMLFPA VLERTGITAF DLSKVIESFI RHEDSLPREL RRHLNSLEER LLESMVWEKG
0601: SSMYNSLIVA RPSLALEINQ LGLLAEPMPS LDAIAALINF SDGANHASSV QKHETCPGQN GGIRSPKRLC TDYRSILVER NSFTSPVKDR LLALGNVKSK
0701: MLPPPLQSAF ASPTRPNPGG GGETCAETGI NIFFTKINKL AAVRINGMVE RLQLSQQIRE SVYCFFQHVL AQRTSLLFSR HIDQIILCCF YGVAKISQMS
0801: LTFREIIYNY RKQPQCKPLV FRSVYVDALQ CRRQGRIGPD HVDIITFYNE IFIPAVKPLL VELGPVRNDR AVEANNKPEG QCPGSPKVSV FPSVPDMSPK
0901: KVSAVHNVYV SPLRGSKMDA LISHSTKSYY ACVGESTHAY QSPSKDLSAI NNRLNNSSNR KRTLNFDAEA GMVSDSMVAN SLNLQNQNQN QNGSDASSSG
1001: GAAPLKTEPT DS
Arabidopsis Description
RBR1RBR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VFS5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.