CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68573	nucleus
CDX72453	nucleus
CDX72643	nucleus
CDX75405	nucleus
CDX76265	nucleus
CDX77460	nucleus
CDX83112	nucleus
CDX85167	nucleus
CDX92996	nucleus
CDX94841	nucleus
CDY02095	nucleus
CDY11608	nucleus
CDY16998	nucleus
CDY17797	nucleus
CDY18083	nucleus
CDY22172
CDY23022	nucleus
CDY27567
CDY29570	nucleus
CDY35481
CDY38800	nucleus
CDY40826
CDY49278	nucleus
CDY53612
CDY57741	nucleus
CDY58656
CDY59943	nucleus
CDY64587	nucleus
CDY67142	nucleus
CDY69708	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G12280.1	CDY16998	AT1G47870.1	20407024
AT3G12280.1	CDY17797	AT1G47870.1	20407024
AT3G12280.1	CDY16998	AT1G47870.1	20706207
AT3G12280.1	CDY17797	AT1G47870.1	20706207
AT3G12280.1	CDY11608	AT1G70210.1	20407024
AT3G12280.1	CDY38800	AT1G70210.1	20407024
AT3G12280.1	CDY59943	AT1G70210.1	20407024
AT3G12280.1	CDY67142	AT1G70210.1	20407024
AT3G12280.1	CDY22172	AT3G08880.1	21798944
AT3G12280.1	CDY58656	AT3G08880.1	21798944
AT3G12280.1	CDY27567	AT3G20740.1	15221456
AT3G12280.1	CDY53612	AT3G20740.1	15221456
AT3G12280.1	CDY27567	AT3G20740.1	18812497
AT3G12280.1	CDY53612	AT3G20740.1	18812497
AT3G12280.1	CDX77460	AT3G24140.1	24571519
AT3G12280.1	CDX85167	AT3G24140.1	24571519
AT3G12280.1	CDX92996	AT3G24140.1	24571519
AT3G12280.1	CDX94841	AT3G24140.1	24571519
AT3G12280.1	CDY18083	AT3G24140.1	24571519
AT3G12280.1	CDY64587	AT3G24140.1	24571519
AT3G12280.1	CDX68573	AT3G50070.1	20407024
AT3G12280.1	CDX83112	AT3G50070.1	20407024
AT3G12280.1	CDY02095	AT3G50070.1	20407024
AT3G12280.1	CDY23022	AT3G50070.1	20407024
AT3G12280.1	CDY35481	AT3G55760.1	20706207
AT3G12280.1	CDY40826	AT3G55760.1	20706207
AT3G12280.1	CDX72453	AT4G34160.1	20407024
AT3G12280.1	CDX75405	AT4G34160.1	20407024
AT3G12280.1	CDX76265	AT4G34160.1	20407024
AT3G12280.1	CDY49278	AT4G34160.1	20407024
AT3G12280.1	CDY57741	AT4G34160.1	20407024
AT3G12280.1	CDY69708	AT4G34160.1	20407024
AT3G12280.1	CDX72643	AT4G37630.1	20407024
AT3G12280.1	CDY29570	AT4G37630.1	20407024

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08440	Canola	nucleus	97.84	97.93
CDY50559	Canola	nucleus	90.86	91.03
CDY52614	Canola	cytosol	89.97	90.77
AT3G12280.1	Thale cress	nucleus	88.99	89.34
CDX73827	Canola	nucleus	84.27	84.77
CDY00765	Canola	mitochondrion	85.94	78.32
KRH13310	Soybean	nucleus	68.93	69.75
VIT_04s0008g02780.t01	Wine grape	nucleus	68.63	69.38
KRH20664	Soybean	nucleus	68.73	68.93
KRH63701	Soybean	nucleus	67.85	68.05
PGSC0003DMT400030280	Potato	nucleus	67.06	67.13
Solyc09g091280.2.1	Tomato	cytosol	66.77	66.7
CDY52391	Canola	nucleus	14.36	63.2
GSMUA_Achr8P00470_001	Banana	nucleus	60.28	60.99
Os08t0538700-01	Rice	nucleus	59.49	59.9
EES14166	Sorghum	nucleus	58.51	58.79
Zm00001d052695_P016	Maize	nucleus	57.42	57.99
Zm00001d031678_P003	Maize	cytosol, nucleus, plastid	57.82	57.48
TraesCS7A01G264800.1	Wheat	nucleus	56.24	56.02
TraesCS7B01G162700.4	Wheat	nucleus, plastid	56.05	55.83
TraesCS7D01G265600.3	Wheat	nucleus	56.24	55.59
GSMUA_Achr6P08220_001	Banana	nucleus	53.29	54.15
HORVU7Hr1G055440.9	Barley	plastid	56.24	53.76
Os11t0533500-01	Rice	nucleus	46.8	48.67
Zm00001d007407_P006	Maize	cytosol, nucleus, plastid	41.59	48.45
TraesCS4A01G143200.1	Wheat	plastid	46.31	48.01
TraesCS4B01G162200.1	Wheat	nucleus	46.21	47.91
TraesCS4D01G159600.1	Wheat	cytosol, nucleus, plastid	46.21	47.91
HORVU4Hr1G039890.2	Barley	cytosol, nucleus, plastid	46.12	47.86
OQU83580	Sorghum	plastid	40.61	47.58
KXG21076	Sorghum	plastid	40.81	47.37
Zm00001d052666_P014	Maize	nucleus	41.3	45.55
KXG26019	Sorghum	cytosol	11.31	42.75

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.2.1	GO:A0A078HWN1	UniProt:A0A078HWN1	EnsemblPlants:CDY42141	ProteinID:CDY42141
ProteinID:CDY42141.1	ncoils:Coil	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006357	GO:GO:0007049
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0051726	EnsemblPlantsGene:GSBRNA2T00074322001
PFAM:PF01857	PFAM:PF01858	PFAM:PF08934	PFAM:PF11934	PANTHER:PTHR13742	PANTHER:PTHR13742:SF22
InterPro:RBR	InterPro:RB_A	InterPro:RB_B	InterPro:RB_C	InterPro:RB_N	InterPro:RB_fam
SMART:SM00385	SMART:SM01367	SMART:SM01368	SUPFAM:SSF47954	UniParc:UPI0004EE8A73	SEG:seg

Description

BnaC05g40780DBnaC05g40780D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HWN1]

Coordinates

chrLK032516:-:75365..80820

Molecular Weight (calculated)

113248.0 Da

IEP (calculated)

8.154

GRAVY (calculated)

-0.201

Length

1017 amino acids

Sequence
(BLAST)

0001: MEEVQPPVTP PIDPNGKRSE AILSDLCEKV LSLEGSICDQ ALKLFTETKP ILSANMANIG SGTREEVERF WFAFVLYSVK MLTLRKQVDG QSVSGDNKFN
0101: LCQILRALKL NIVDFFKELP QFVVKAGPVL CELYGADWEN RLQAKELQAN FVHLSLLSKY YKRGYQEFFL TYDANAENTS ANSASYLPDS YRFGWLLFLA
0201: LRNHAFSRFK DLVTCTNGLV SILGILILHV PCRFRNFSIQ DSSRFVKKGD KEVDLVASLC KIYDASEDEL KKIMDQANNL IETILKKKTS SASTCKIDKL
0301: DNINPDGLTY FEDLLDEASI STSLITLEKD YEDSVCNKGE LDERVFINEE DSLLGSGSLS AGAVNVTGVK RKIDSLSSPA RTFISPLSPH KSPAAKTNTI
0401: SGAIKLTATP VSTAMTTAKW LRTVICPLLP KPSPGLEHFL KSCDRDITTD VTRRAHVMLE AIFPNSSLGD RCAGGSLQPV NLMDDIWAEQ RRLEAVKLYY
0501: RVLEAMCIAE AQILHANNLN SLLTNERFHR CMLACSAELV LATHKSITML FPAVLERTGI TAFDLCKVIE SFIRHEDSLP RELRRHLNSL EERLLESMVW
0601: EKGSSMYNSL IVARPLLALE INRLGLLAEP MPSLDAIAAL INFSEGSHHA PYIQKHETCP GQNGDIKSPK RQCTDYRSIL VERNSFTSPV KDRLLAFGNV
0701: KSKMLPPPLQ SAFASPTRPN PGGGGETCAE TGINIFFTKI NKLAAVRING MVERLQLSQQ IRESVYRLFQ HVLAQRTSLL FNRHIDQIIL CCFYGVAKIS
0801: QMSLTFREII YNYRKQPQCK PLVFRSVYVD SHQSRRQGQG RVGPDHVDII TFYNEMFIPA VKPLLVEIIP VKKDQAMEAN NKPEGSHCPG SPKVSVFPSV
0901: PDMSPKKVSA VHNVYVSPLR GSKMDALISH SSKSYYACVG ESTHAYQSPS KDLSAINNRL NNCSTNRKRT LKFDVEAGLV SDSMVGNSLY LQNQNQNGSD
1001: ASSSGGAPLK TEPVDSS

Best Arabidopsis Sequence Match ( AT3G12280.1 )
(BLAST)

0001: MEEVQPPVTP PIEPNGKRSE ASLLDICEKV LSLDGSTCDE ALKLFTETKR ILSASMSNIG SGTREEVERF WFAFILYSVK RLSVRKEADG LSVSGDNEFN
0101: LCQILRALKL NIVDFFKELP QFVVKAGSVL GELYGADWEN RLQAKEVQAN FVHLSLLSKY YKRGFREFFL TYDANAEKNS ANSSTYLLDS YRFGWLLFLA
0201: LRNHAFSRFK DLVTCSNGVV SILAILIIHV PCRFRNFSIQ DSSRFVKKGD KGVDLVASLC KIYDASEDEL RIVIDKANNL VETILKKKPS PASECQTDKL
0301: DNIDPDGLTY FEDLLEETSI STSLITLEKD YYDGKGELDE RVFINEEDSL LGSGSLSAGA VNITGVKRKI DALSSPARTF ISPLSPHKSP AAKTNGISGA
0401: TKLAATPVST AMTTAKWLRT VISPLLPKPS PGLEHFLKSC DRDITNDVTR RAHIILEAIF PNSSLGAQCG GGSLQAVDLM DDIWAEQRRL EACKLYYRVL
0501: EAMCKAEAQI LHANNLNSLL TNERFHRCML ACSAELVLAT HKTITMLFPA VLERTGITAF DLSKVIESFI RHEDSLPREL RRHLNSLEER LLESMVWEKG
0601: SSMYNSLIVA RPSLALEINQ LGLLAEPMPS LDAIAALINF SDGANHASSV QKHETCPGQN GGIRSPKRLC TDYRSILVER NSFTSPVKDR LLALGNVKSK
0701: MLPPPLQSAF ASPTRPNPGG GGETCAETGI NIFFTKINKL AAVRINGMVE RLQLSQQIRE SVYCFFQHVL AQRTSLLFSR HIDQIILCCF YGVAKISQMS
0801: LTFREIIYNY RKQPQCKPLV FRSVYVDALQ CRRQGRIGPD HVDIITFYNE IFIPAVKPLL VELGPVRNDR AVEANNKPEG QCPGSPKVSV FPSVPDMSPK
0901: KVSAVHNVYV SPLRGSKMDA LISHSTKSYY ACVGESTHAY QSPSKDLSAI NNRLNNSSSN RKRTLNFDAE AGMVSDSMVA NSLNLQNQNQ NQNGSDASSS
1001: GGAAPLKTEP TDS

Arabidopsis Description

RBR1RBR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VFS5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.