CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER91226	nucleus
EER92677	nucleus
EER96424	nucleus, nucleus
EES10011
EES11756	nucleus
EES13318
EES17294	nucleus
KXG22636	nucleus
OQU79846
OQU89443	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G12280.1	EES11756	AT1G47870.1	20407024
AT3G12280.1	EES11756	AT1G47870.1	20706207
AT3G12280.1	OQU89443	AT1G70210.1	20407024
AT3G12280.1	EES13318	AT3G20740.1	15221456
AT3G12280.1	OQU79846	AT3G20740.1	15221456
AT3G12280.1	EES13318	AT3G20740.1	18812497
AT3G12280.1	OQU79846	AT3G20740.1	18812497
AT3G12280.1	KXG22636	AT3G24140.1	24571519
AT3G12280.1	EER96424	AT3G50070.1	20407024
AT3G12280.1	EES10011	AT3G55760.1	20706207
AT3G12280.1	EER96424	AT4G34160.1	20407024
AT3G12280.1	EER91226	AT4G37630.1	20407024
AT3G12280.1	EER92677	AT4G37630.1	20407024
AT3G12280.1	EES17294	AT4G37630.1	20407024

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG26019	Sorghum	cytosol	28.0	90.33
KXG21076	Sorghum	plastid	90.55	89.73
Zm00001d007407_P006	Maize	cytosol, nucleus, plastid	87.44	86.94
Os11t0533500-01	Rice	nucleus	73.85	65.54
TraesCS4A01G143200.1	Wheat	plastid	72.93	64.53
TraesCS4D01G159600.1	Wheat	cytosol, nucleus, plastid	72.7	64.32
TraesCS4B01G162200.1	Wheat	nucleus	72.12	63.81
HORVU4Hr1G039890.2	Barley	cytosol, nucleus, plastid	72.0	63.78
VIT_14s0068g00840.t01	Wine grape	cytosol	32.49	47.96
EES14166	Sorghum	nucleus	50.58	43.38
VIT_04s0008g02780.t01	Wine grape	nucleus	50.12	43.24
GSMUA_Achr6P08220_001	Banana	nucleus	49.77	43.16
KRH13310	Soybean	nucleus	49.54	42.79
KRH20664	Soybean	nucleus	49.65	42.5
KRH63701	Soybean	nucleus	49.19	42.11
AT3G12280.1	Thale cress	nucleus	47.81	40.97
Solyc09g091280.2.1	Tomato	cytosol	48.04	40.96
PGSC0003DMT400030280	Potato	nucleus	47.93	40.94
CDY08440	Canola	nucleus	47.93	40.94
Bra034764.1-P	Field mustard	nucleus	47.93	40.94
CDX73827	Canola	nucleus	47.58	40.85
CDY50559	Canola	nucleus	47.7	40.79
CDY52614	Canola	cytosol	47.23	40.67
Bra038707.1-P	Field mustard	nucleus	47.7	40.63
CDY42141	Canola	cytosol	47.58	40.61
Bra001446.1-P	Field mustard	nucleus	47.47	40.12
CDY00765	Canola	mitochondrion	47.23	36.74
CDY52391	Canola	nucleus	7.26	27.27

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.2.1	UniProt:A0A1Z5RIH8	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006357
GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0051726
EnsemblPlants:OQU83580	ProteinID:OQU83580	ProteinID:OQU83580.1	PFAM:PF01857	PFAM:PF01858	PFAM:PF11934
PANTHER:PTHR13742	PANTHER:PTHR13742:SF22	InterPro:RBR	InterPro:RB_A	InterPro:RB_B	InterPro:RB_N
InterPro:RB_fam	SMART:SM00385	SMART:SM01367	SMART:SM01368	EnsemblPlantsGene:SORBI_3005G138300	SUPFAM:SSF47954
UniParc:UPI0003C6AE40	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:59207659..59226021

Molecular Weight (calculated)

96102.2 Da

IEP (calculated)

7.994

GRAVY (calculated)

-0.285

Length

868 amino acids

Sequence
(BLAST)

001: MSSPDPSPST STQQPKQLEG VTVLLKEASR FYRRAYNELF SGGTTEQEPE SSTSTPEYML FGWHLFLMLR SRSPELFKDL VSCIHGLVAV LAILLIHVPA
101: KFRRFMIDGS SHLIKQNEKG MDLIASLCHN YHASEECVKE MMDKSHKAIE DIFGTKALSA SEGKTENLDK IDTDGLMYFK GLIDTECFQS NLEKMEKLCN
201: PNSCEGELDY KSILINNDYI PCAENSPGDS TNLGHSKRVF EILASPTKTI KNMLTVPSSP LSPATGGSVK ILQMTPVTSA MTTAKWLREV ISSLPEKPSS
301: KLQQLLSSCD RDLTNAVTER VSIVLEAIFP TKSSADRGGS LGISCANAFD IPWAEARKME ASKLYYRVLE AICRAELQNN NVNNLTPLLS NERFHRCLIA
401: CSAELVLATH KPVFMMFPAV LDSTGLTAFD LSKIIENFVR HEETLPRQLK RHLNSLEQQL LESMVWEKGS SLYNSLIVAR PSVTSEIKRL GLLAEPMPSL
501: DDLVARQNIH VEGLPATPSK KRAAGPDDNA DPRSPKRSCN ESRNTVVEHN LQTPPPKQSH MVSTSLKAKC HPLQSTFESP TVSNPVGGNE KCADVTIKIF
601: FSKILKLAAV RIRNLCERLQ HVELTERVYN VFNQILDQQT TLFFNRHIDQ LILCCLYGVA KVCKLEPSFK ELLNNYRKEA QCKPEVFSNV YIGSRNRNDV
701: LVSRHVDIIT FYNEVFVPAA KSFLVSLISS GTRPEDKKNA SGQIPGSPKP SPLPNLPDLS PKKVSASHNV YVSPLQQAKM DLLLSPSSRS FYACFGEGTH
801: AYQSPSKDLA AINSCLNYSG RRLSSRLNFD MVSDSVVAGS LGQPNGGSTS LDPAAAFSPI SKKREPDT

Best Arabidopsis Sequence Match ( AT3G12280.1 )
(BLAST)

0001: MEEVQPPVTP PIEPNGKRSE ASLLDICEKV LSLDGSTCDE ALKLFTETKR ILSASMSNIG SGTREEVERF WFAFILYSVK RLSVRKEADG LSVSGDNEFN
0101: LCQILRALKL NIVDFFKELP QFVVKAGSVL GELYGADWEN RLQAKEVQAN FVHLSLLSKY YKRGFREFFL TYDANAEKNS ANSSTYLLDS YRFGWLLFLA
0201: LRNHAFSRFK DLVTCSNGVV SILAILIIHV PCRFRNFSIQ DSSRFVKKGD KGVDLVASLC KIYDASEDEL RIVIDKANNL VETILKKKPS PASECQTDKL
0301: DNIDPDGLTY FEDLLEETSI STSLITLEKD YYDGKGELDE RVFINEEDSL LGSGSLSAGA VNITGVKRKI DALSSPARTF ISPLSPHKSP AAKTNGISGA
0401: TKLAATPVST AMTTAKWLRT VISPLLPKPS PGLEHFLKSC DRDITNDVTR RAHIILEAIF PNSSLGAQCG GGSLQAVDLM DDIWAEQRRL EACKLYYRVL
0501: EAMCKAEAQI LHANNLNSLL TNERFHRCML ACSAELVLAT HKTITMLFPA VLERTGITAF DLSKVIESFI RHEDSLPREL RRHLNSLEER LLESMVWEKG
0601: SSMYNSLIVA RPSLALEINQ LGLLAEPMPS LDAIAALINF SDGANHASSV QKHETCPGQN GGIRSPKRLC TDYRSILVER NSFTSPVKDR LLALGNVKSK
0701: MLPPPLQSAF ASPTRPNPGG GGETCAETGI NIFFTKINKL AAVRINGMVE RLQLSQQIRE SVYCFFQHVL AQRTSLLFSR HIDQIILCCF YGVAKISQMS
0801: LTFREIIYNY RKQPQCKPLV FRSVYVDALQ CRRQGRIGPD HVDIITFYNE IFIPAVKPLL VELGPVRNDR AVEANNKPEG QCPGSPKVSV FPSVPDMSPK
0901: KVSAVHNVYV SPLRGSKMDA LISHSTKSYY ACVGESTHAY QSPSKDLSAI NNRLNNSSSN RKRTLNFDAE AGMVSDSMVA NSLNLQNQNQ NQNGSDASSS
1001: GGAAPLKTEP TDS

Arabidopsis Description

RBR1RBR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VFS5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.