CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 3
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER89265
EES14166
KXG21076
KXG26019
KXG40039
OQU83580
OQU91278

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20740.1	KXG40039	AT1G02580.1	10962025
AT3G20740.1	KXG40039	AT1G02580.1	11114524
AT3G20740.1	KXG40039	AT1G02580.1	11148284
AT3G20740.1	KXG40039	AT1G02580.1	12970192
AT3G20740.1	KXG40039	AT1G02580.1	15456723
AT3G20740.1	KXG40039	AT1G02580.1	15469499
AT3G20740.1	KXG40039	AT1G02580.1	18812497
AT3G20740.1	EER89265	AT2G23380.1	14871310
AT3G20740.1	EER89265	AT2G23380.1	15456723
AT3G20740.1	EER89265	AT2G23380.1	18812497
AT3G20740.1	EES14166	AT3G12280.1	15221456
AT3G20740.1	KXG21076	AT3G12280.1	15221456
AT3G20740.1	KXG26019	AT3G12280.1	15221456
AT3G20740.1	OQU83580	AT3G12280.1	15221456
AT3G20740.1	EES14166	AT3G12280.1	18812497
AT3G20740.1	KXG21076	AT3G12280.1	18812497
AT3G20740.1	KXG26019	AT3G12280.1	18812497
AT3G20740.1	OQU83580	AT3G12280.1	18812497
AT3G20740.1	KXG40039	AT4G02020.1	15456723
AT3G20740.1	OQU91278	AT5G58230.1	12970192
AT3G20740.1	OQU91278	AT5G58230.1	18812497

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d024698_P002	Maize	cytosol	76.22	98.94
Os08t0137100-01	Rice	cytosol	67.68	88.56
GSMUA_Achr5P26370_001	Banana	cytosol	60.98	81.52
VIT_19s0014g05210.t01	Wine grape	plastid	59.55	79.19
TraesCS7A01G089100.1	Wheat	cytosol	57.93	75.2
TraesCS4A01G388400.1	Wheat	cytosol, plastid	57.52	74.87
Solyc07g064090.2.1	Tomato	nucleus	56.5	74.73
PGSC0003DMT400049479	Potato	cytosol	56.5	74.73
KRH31935	Soybean	cytosol	57.52	74.08
KRH71526	Soybean	cytosol	57.32	74.02
TraesCS7A01G308300.1	Wheat	nucleus, plastid	69.11	71.88
HORVU7Hr1G073410.1	Barley	cytosol	67.28	69.54
TraesCS7D01G305100.1	Wheat	nucleus, plastid	68.29	69.28
AT3G20740.1	Thale cress	cytosol	51.63	68.83
CDY53612	Canola	plastid	51.42	68.56
CDY27567	Canola	plastid	51.22	68.29
KRH22237	Soybean	cytosol	52.44	67.01
KRH27099	Soybean	cytosol, mitochondrion, nucleus	30.08	65.78
TraesCS7D01G084500.1	Wheat	plastid	58.94	63.74
TraesCS7A01G089200.1	Wheat	cytoskeleton, cytosol, nucleus, plastid	58.74	63.52
EES13318	Sorghum	mitochondrion	57.52	63.03
Os08t0137250-01	Rice	cytosol	59.15	62.45
CDY19607	Canola	cytosol, nucleus, plastid	48.37	60.41
CDY06378	Canola	mitochondrion	32.52	59.48
CDY19611	Canola	plastid	45.94	59.47
CDY56255	Canola	cytosol	45.94	57.51
CDY68274	Canola	cytosol, nucleus	22.76	54.9
CDY19610	Canola	cytoskeleton, cytosol, nucleus	29.88	49.33
Bra041121.1-P	Field mustard	cytosol	5.49	38.03
CDY10986	Canola	extracellular	9.35	22.33

Protein Annotations

MapMan:12.3.3.1.1.2	Gene3D:2.130.10.10	UniProt:A0A1Z5R8Y0	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016571
GO:GO:0019538	GO:GO:0035098	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:OQU79846
ProteinID:OQU79846	ProteinID:OQU79846.1	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR10253	PANTHER:PTHR10253:SF5	InterPro:Polycomb_EED	SMART:SM00320	EnsemblPlantsGene:SORBI_3007G032400
SUPFAM:SSF50978	UniParc:UPI000B8BA2A5	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:2871851..2875849

Molecular Weight (calculated)

54600.8 Da

IEP (calculated)

7.269

GRAVY (calculated)

-0.377

Length

492 amino acids

Sequence
(BLAST)

001: MLAQTHKTLA GRRDTSNGLH LYTRKALLQN SIPANSSLDL RFDLNAAPPQ PRRKRPPREV TVPVAAASNP KPRPPPVQSK ENQAEGGAAA EGAAAEEGEK
101: YRPAPEILPL PPAMAKLGPG QGLGCEAAEG SLVPSRKREY KPCGKHTEGK RPLYAIGFNF MDARYYDVFA TVGGNRLTTY RCLENGSFAL LQAYIDEDKD
201: ESFYTLSWAR DHVDGSPLLV AAGSNGIIRV INCATEKLAK SFVGHGDSIN EIRTQPLKPS LIISASKDES VRLWNVHTGI CILIFAGAGG HRNEVLSVDF
301: HPSDIERFAS CGMDNTVKIW SMKEFWLYVD KSYSWTDLPS KFPTKYVQFP VLIAAVHSNY VDCTRWLGDF ILSKSVDNEI VLWEPKTKEQ SPGEGSIDIL
401: QKYPVPECDI WFIKFSCDFH FNQLAIGNRE GKIYVWEVQS SPPVLIARLY NQQCKSPIRQ TAVSFDGSTI LGAGEDGTIW RWDEVDHPST KN

Best Arabidopsis Sequence Match ( AT3G20740.1 )
(BLAST)

001: MSKITLGNES IVGSLTPSNK KSYKVTNRIQ EGKKPLYAVV FNFLDARFFD VFVTAGGNRI TLYNCLGDGA ISALQSYADE DKEESFYTVS WACGVNGNPY
101: VAAGGVKGII RVIDVNSETI HKSLVGHGDS VNEIRTQPLK PQLVITASKD ESVRLWNVET GICILIFAGA GGHRYEVLSV DFHPSDIYRF ASCGMDTTIK
201: IWSMKEFWTY VEKSFTWTDD PSKFPTKFVQ FPVFTASIHT NYVDCNRWFG DFILSKSVDN EILLWEPQLK ENSPGEGASD VLLRYPVPMC DIWFIKFSCD
301: LHLSSVAIGN QEGKVYVWDL KSCPPVLITK LSHNQSKSVI RQTAMSVDGS TILACCEDGT IWRWDVITK

Arabidopsis Description

FIEPolycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM [Source:UniProtKB/Swiss-Prot;Acc:Q9LT47]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.