Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH31935 | Soybean | cytosol | 97.38 | 97.12 |
| VIT_19s0014g05210.t01 | Wine grape | plastid | 85.3 | 87.84 |
| PGSC0003DMT400049479 | Potato | cytosol | 83.99 | 86.02 |
| Solyc07g064090.2.1 | Tomato | nucleus | 83.46 | 85.48 |
| GSMUA_Achr5P26370_001 | Banana | cytosol | 81.36 | 84.24 |
| KRH22237 | Soybean | cytosol | 81.63 | 80.78 |
| KRH27099 | Soybean | cytosol, mitochondrion, nucleus | 46.46 | 78.67 |
| Os08t0137100-01 | Rice | cytosol | 75.07 | 76.06 |
| Zm00001d024698_P002 | Maize | cytosol | 74.54 | 74.93 |
| AT3G20740.1 | Thale cress | cytosol | 70.87 | 73.17 |
| CDY53612 | Canola | plastid | 70.34 | 72.63 |
| CDY27567 | Canola | plastid | 70.08 | 72.36 |
| TraesCS7A01G089100.1 | Wheat | cytosol | 64.3 | 64.64 |
| TraesCS4A01G388400.1 | Wheat | cytosol, plastid | 63.52 | 64.02 |
| CDY19611 | Canola | plastid | 62.73 | 62.89 |
| CDY06378 | Canola | mitochondrion | 44.09 | 62.45 |
| CDY19607 | Canola | cytosol, nucleus, plastid | 64.04 | 61.93 |
| CDY56255 | Canola | cytosol | 62.2 | 60.31 |
| CDY68274 | Canola | cytosol, nucleus | 31.23 | 58.33 |
| HORVU7Hr1G073410.1 | Barley | cytosol | 72.7 | 58.19 |
| TraesCS7A01G308300.1 | Wheat | nucleus, plastid | 72.18 | 58.14 |
| OQU79846 | Sorghum | plastid | 74.02 | 57.32 |
| TraesCS7D01G305100.1 | Wheat | nucleus, plastid | 72.7 | 57.11 |
| TraesCS7A01G089200.1 | Wheat | cytoskeleton, cytosol, nucleus, plastid | 63.52 | 53.19 |
| TraesCS7D01G084500.1 | Wheat | plastid | 62.47 | 52.31 |
| EES13318 | Sorghum | mitochondrion | 61.42 | 52.12 |
| CDY19610 | Canola | cytoskeleton, cytosol, nucleus | 40.16 | 51.34 |
| Os08t0137250-01 | Rice | cytosol | 61.15 | 50.0 |
| Zm00001d049608_P001 | Maize | mitochondrion | 59.58 | 49.24 |
| CDY10986 | Canola | extracellular | 12.07 | 22.33 |
Protein Annotations
| EntrezGene:100795288 | MapMan:12.3.3.1.1.2 | Gene3D:2.130.10.10 | EMBL:ACUP02000902 | InterPro:G-protein_beta_WD-40_rep | EnsemblPlantsGene:GLYMA_02G152200 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005654 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0016571 | GO:GO:0019538 | GO:GO:0035098 | UniProt:I1JFF5 | InterPro:IPR001680 |
| InterPro:IPR015943 | InterPro:IPR017986 | EnsemblPlants:KRH71526 | ProteinID:KRH71526 | ProteinID:KRH71526.1 | PFAM:PF00400 |
| PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR10253 | PANTHER:PTHR10253:SF5 |
| InterPro:Polycomb_EED | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI0002336E66 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat |
| InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | : | : | : |
Description
hypothetical protein
Coordinates
chr2:+:15632551..15638614
Molecular Weight (calculated)
42483.4 Da
IEP (calculated)
5.643
GRAVY (calculated)
-0.099
Length
381 amino acids
Sequence
(BLAST)
(BLAST)
001: MVGETATGKS VGLGLGCDPV VGSLTCSKKR EYRVTNRLQE GKRPLYAVIF NFIDSRYFNV FATVGGNRVT VYQCLEGGVI AVLQSYVDED KDESFYTVSW
101: ACNVDGTPFV VAGGINGVMR VIDAGSEKIH KSFVGHGDSV NEIRTQTLKP SLVISASKDE SVRLWNVHTG ICILIFAGAG GHRNEVLSVD FHPSDIYSIA
201: SCGMDNTVKI WSMKEFWTYV EKSFTWTDLP SKFPTKYVQF PVYNASVHLN YVDCNRWLGD FILSKSVDNE IILWEPKVKE QTPGEGVVDI LQKYPVPECD
301: IWFIKFSCDF HFNIAAVGNR EGKIFVWELQ SSPPVLVARL SHPQSKSPIR QTATSFDGST ILSCCEDGTI WRWDDVTNSS D
101: ACNVDGTPFV VAGGINGVMR VIDAGSEKIH KSFVGHGDSV NEIRTQTLKP SLVISASKDE SVRLWNVHTG ICILIFAGAG GHRNEVLSVD FHPSDIYSIA
201: SCGMDNTVKI WSMKEFWTYV EKSFTWTDLP SKFPTKYVQF PVYNASVHLN YVDCNRWLGD FILSKSVDNE IILWEPKVKE QTPGEGVVDI LQKYPVPECD
301: IWFIKFSCDF HFNIAAVGNR EGKIFVWELQ SSPPVLVARL SHPQSKSPIR QTATSFDGST ILSCCEDGTI WRWDDVTNSS D
001: MSKITLGNES IVGSLTPSNK KSYKVTNRIQ EGKKPLYAVV FNFLDARFFD VFVTAGGNRI TLYNCLGDGA ISALQSYADE DKEESFYTVS WACGVNGNPY
101: VAAGGVKGII RVIDVNSETI HKSLVGHGDS VNEIRTQPLK PQLVITASKD ESVRLWNVET GICILIFAGA GGHRYEVLSV DFHPSDIYRF ASCGMDTTIK
201: IWSMKEFWTY VEKSFTWTDD PSKFPTKFVQ FPVFTASIHT NYVDCNRWFG DFILSKSVDN EILLWEPQLK ENSPGEGASD VLLRYPVPMC DIWFIKFSCD
301: LHLSSVAIGN QEGKVYVWDL KSCPPVLITK LSHNQSKSVI RQTAMSVDGS TILACCEDGT IWRWDVITK
101: VAAGGVKGII RVIDVNSETI HKSLVGHGDS VNEIRTQPLK PQLVITASKD ESVRLWNVET GICILIFAGA GGHRYEVLSV DFHPSDIYRF ASCGMDTTIK
201: IWSMKEFWTY VEKSFTWTDD PSKFPTKFVQ FPVFTASIHT NYVDCNRWFG DFILSKSVDN EILLWEPQLK ENSPGEGASD VLLRYPVPMC DIWFIKFSCD
301: LHLSSVAIGN QEGKVYVWDL KSCPPVLITK LSHNQSKSVI RQTAMSVDGS TILACCEDGT IWRWDVITK
Arabidopsis Description
FIEPolycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM [Source:UniProtKB/Swiss-Prot;Acc:Q9LT47]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.