CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG96530
KRH22237
KRH27099
KRH28171
KRH28654
KRH31789
KRH31935
KRH42369
KRH58491
KRH68267
KRH68336
KRH69214
KRH71526
KRH77315

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G02580.1	KRG96530	AT1G02580.1	10962025
AT1G02580.1	KRH28654	AT1G02580.1	10962025
AT1G02580.1	KRH31789	AT1G02580.1	10962025
AT1G02580.1	KRH68267	AT1G02580.1	10962025
AT1G02580.1	KRH68336	AT1G02580.1	10962025
AT1G02580.1	KRH69214	AT1G02580.1	10962025
AT1G02580.1	KRG96530	AT1G02580.1	11148284
AT1G02580.1	KRH28654	AT1G02580.1	11148284
AT1G02580.1	KRH31789	AT1G02580.1	11148284
AT1G02580.1	KRH68267	AT1G02580.1	11148284
AT1G02580.1	KRH68336	AT1G02580.1	11148284
AT1G02580.1	KRH69214	AT1G02580.1	11148284
AT1G02580.1	KRH28171	AT2G35670.1	15456723
AT1G02580.1	KRH77315	AT2G35670.1	15456723
AT1G02580.1	KRH28171	AT2G35670.1	16924116
AT1G02580.1	KRH77315	AT2G35670.1	16924116
AT1G02580.1	KRH22237	AT3G20740.1	10962025
AT1G02580.1	KRH27099	AT3G20740.1	10962025
AT1G02580.1	KRH31935	AT3G20740.1	10962025
AT1G02580.1	KRH71526	AT3G20740.1	10962025
AT1G02580.1	KRH22237	AT3G20740.1	11114524
AT1G02580.1	KRH27099	AT3G20740.1	11114524
AT1G02580.1	KRH31935	AT3G20740.1	11114524
AT1G02580.1	KRH71526	AT3G20740.1	11114524
AT1G02580.1	KRH22237	AT3G20740.1	11148284
AT1G02580.1	KRH27099	AT3G20740.1	11148284
AT1G02580.1	KRH31935	AT3G20740.1	11148284
AT1G02580.1	KRH71526	AT3G20740.1	11148284
AT1G02580.1	KRH22237	AT3G20740.1	15456723
AT1G02580.1	KRH27099	AT3G20740.1	15456723
AT1G02580.1	KRH31935	AT3G20740.1	15456723
AT1G02580.1	KRH71526	AT3G20740.1	15456723
AT1G02580.1	KRH22237	AT3G20740.1	15469499
AT1G02580.1	KRH27099	AT3G20740.1	15469499
AT1G02580.1	KRH31935	AT3G20740.1	15469499
AT1G02580.1	KRH71526	AT3G20740.1	15469499
AT1G02580.1	KRH22237	AT3G20740.1	18812497
AT1G02580.1	KRH27099	AT3G20740.1	18812497
AT1G02580.1	KRH31935	AT3G20740.1	18812497
AT1G02580.1	KRH71526	AT3G20740.1	18812497
AT1G02580.1	KRH42369	AT5G58230.1	12970192
AT1G02580.1	KRH58491	AT5G58230.1	12970192

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28654	Soybean	nucleus	61.43	71.43
KRG96530	Soybean	cytosol, nucleus	56.63	67.99
KRH68267	Soybean	nucleus	61.18	66.94
KRH31789	Soybean	nucleus	51.72	48.39
KRH69214	Soybean	nucleus	51.6	48.39
CDY15252	Canola	nucleus	25.18	46.28
GSMUA_Achr1P24850_001	Banana	nucleus	43.37	40.07
KXG40039	Sorghum	nucleus	42.51	38.49
Os03t0307800-01	Rice	nucleus	42.14	38.32
TraesCS4D01G184600.3	Wheat	nucleus, plastid	41.89	38.31
TraesCS4B01G181400.3	Wheat	nucleus, plastid	41.89	38.31
AT1G02580.1	Thale cress	nucleus	32.06	37.88
CDX89960	Canola	nucleus	29.36	37.46
Bra033334.1-P	Field mustard	nucleus	29.36	37.46
HORVU4Hr1G053740.8	Barley	cytosol, mitochondrion, nucleus	41.4	36.95
KRH28444	Soybean	nucleus	39.07	36.93
KRH77020	Soybean	nucleus	38.57	36.47
CDY37467	Canola	nucleus	29.24	35.84
CDY32472	Canola	nucleus	28.13	35.61
Bra032592.1-P	Field mustard	nucleus	27.64	35.21
TraesCS4A01G121300.4	Wheat	mitochondrion	41.4	34.81
Zm00001d047636_P002	Maize	nucleus	37.22	34.12
Zm00001d028890_P002	Maize	nucleus	38.94	28.53
KRH75137	Soybean	cytosol	2.46	15.75
KRH38763	Soybean	cytosol	6.63	15.47
KRH09264	Soybean	nucleus	6.51	15.19
KRH54981	Soybean	plastid	9.21	14.26
KRH35109	Soybean	nucleus	7.74	13.12
KRG91687	Soybean	nucleus	7.99	13.1
KRG94193	Soybean	cytosol, nucleus	7.0	10.73
KRH64461	Soybean	nucleus	12.04	9.25
KRH53486	Soybean	nucleus	12.04	9.18
KRH68208	Soybean	nucleus	10.93	9.05
KRH06474	Soybean	nucleus	10.69	8.81
KRH47912	Soybean	nucleus	10.69	8.8
KRG96460	Soybean	cytosol, mitochondrion, nucleus, plastid	10.57	8.72
KRH45215	Soybean	nucleus	11.06	8.27
KRH01524	Soybean	nucleus	11.06	8.27
KRH37214	Soybean	nucleus	10.69	7.09
KRH12193	Soybean	nucleus	10.44	6.93
KRG94170	Soybean	nucleus	4.05	6.93
KRH15817	Soybean	nucleus	11.55	4.68
KRH05241	Soybean	nucleus	11.55	4.63
KRH53306	Soybean	nucleus	10.93	4.36
KRH64610	Soybean	nucleus	10.93	4.27

Protein Annotations

KEGG:00310+2.1.1.43	Gene3D:1.10.10.60	MapMan:12.3.3.1.1.4	MapMan:12.3.3.3	Gene3D:2.170.270.10	EMBL:ACUP02002107
InterPro:CXC_dom	EnsemblPlantsGene:GLYMA_03G224300	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009987	GO:GO:0016043
GO:GO:0016740	GO:GO:0018024	GO:GO:0019538	GO:GO:0031519	GO:GO:0032259	GO:GO:0034968
InterPro:Hist-Lys_N-MeTrfase_EZ	InterPro:Homeobox-like_sf	InterPro:IPR001214	InterPro:IPR025778	InterPro:IPR026489	UniProt:K7KGG9
EnsemblPlants:KRH68336	ProteinID:KRH68336	ProteinID:KRH68336.1	PFAM:PF00856	PFscan:PS50280	PFscan:PS51576
PFscan:PS51633	PANTHER:PTHR22884	PANTHER:PTHR22884:SF237	InterPro:SET_dom	SMART:SM00317	SMART:SM01114
SUPFAM:SSF46689	SUPFAM:SSF82199	InterPro:Tesmin/TSO1-like_CXC	UniParc:UPI000294A3DD	:	:

Description

hypothetical protein

Coordinates

chr3:+:42656295..42665237

Molecular Weight (calculated)

93604.4 Da

IEP (calculated)

8.033

GRAVY (calculated)

-0.757

Length

814 amino acids

Sequence
(BLAST)

001: MVNKTSNSTS KHQKQHGEAE KDTVGRTLKI KIKQLTDQVN VKRGKSVKEK VERHWNNLKS LFSMVELEIS RRESLQTKEK VNMLSSRIGK PLSKFNGFPK
101: DMIEKDRINN ADLSLTKTIR IPKKEKIPPY TSWVYVVRNE RMAKDQTVLG KYQMYYDKNR GEMMICSDSE EEMVNPKDVK HDFTEAEDQI LWTTLAEYGS
201: TEEIFSIVKE IVKTTDSQIQ ERYEILNKKN MRSPSQNFED CHCRGCQNHL GICLEENLNV ILEPFDNFFC RRCLIFDCSV HGIYQPLIYH SEKQSIWSEL
301: EGDKKPCSKQ CYIMLKDVNI LSKNTSQRYF RDKIITPMEE DPTLPHDEPQ DSSKRLRTPN DIITEIDLRY MELNLDANDE ENHTTYGASL KSLNEHSSGK
401: STVFYNYSHD EQGKGVMDGE KDLTNEIEFN QLSISREVQA YEMTNESNWR PLERDLYLKG VEMFGKNSCL IAFNLLHGLK TCIEVTKYMS ACDETITHGS
501: IPSSTVDKKE KINAEFTDQE MASRSRSQRK KGKPRKFNYS RKSAGLPPRW RKIAYGQNQY NKQYTPCGCQ GMCGKECPCL LHGTCCEKYC GCSKLCNNRF
601: RGCRCAKSQC RSRQCPCFAA NRECDPDVCR NCWVSCGDGS LGEPPRCGDG KCGNMNLLLG LKERILLAKS DVIGWGTFAK NPINKNVCLG EYTGELITPK
701: EAEKRGKLYD RINTSFLFNL NDRWVIDSCR LGDKLKFANH SSKPNCYAKV MLVGGEHRVG IFSKENIEAG EEIFYDYWYD LDCAPQWALP PDEVSKKDES
801: IVSQGRAKKN QSHC

Best Arabidopsis Sequence Match ( AT2G23380.1 )
(BLAST)

001: MASEASPSSS ATRSEPPKDS PAEERGPASK EVSEVIESLK KKLAADRCIS IKKRIDENKK NLFAITQSFM RSSMERGGSC KDGSDLLVKR QRDSPGMKSG
101: IDESNNNRYV EDGPASSGMV QGSSVPVKIS LRPIKMPDIK RLSPYTTWVF LDRNQRMTED QSVVGRRRIY YDQTGGEALI CSDSEEEAID DEEEKRDFLE
201: PEDYIIRMTL EQLGLSDSVL AELASFLSRS TSEIKARHGV LMKEKEVSES GDNQAESSLL NKDMEGALDS FDNLFCRRCL VFDCRLHGCS QDLIFPAEKP
301: APWCPPVDEN LTCGANCYKT LLKSGRFPGY GTIEGKTGTS SDGAGTKTTP TKFSSKLNGR KPKTFPSESA SSNEKCALET SDSENGLQQD TNSDKVSSSP
401: KVKGSGRRVG RKRNKNRVAE RVPRKTQKRQ KKTEASDSDS IASGSCSPSD AKHKDNEDAT SSSQKHVKSG NSGKSRKNGT PAEVSNNSVK DDVPVCQSNE
501: VASELDAPGS DESLRKEEFM GETVSRGRLA TNKLWRPLEK SLFDKGVEIF GMNSCLIARN LLSGFKSCWE VFQYMTCSEN KASFFGGDGL NPDGSSKFDI
601: NGNMVNNQVR RRSRFLRRRG KVRRLKYTWK SAAYHSIRKR ITEKKDQPCR QFNPCNCKIA CGKECPCLLN GTCCEKYCGC PKSCKNRFRG CHCAKSQCRS
701: RQCPCFAADR ECDPDVCRNC WVIGGDGSLG VPSQRGDNYE CRNMKLLLKQ QQRVLLGISD VSGWGAFLKN SVSKHEYLGE YTGELISHKE ADKRGKIYDR
801: ENCSFLFNLN DQFVLDAYRK GDKLKFANHS PEPNCYAKVI MVAGDHRVGI FAKERILAGE ELFYDYRYEP DRAPAWAKKP EAPGSKKDEN VTPSVGRPKK
901: LA

Arabidopsis Description

CLFHistone-lysine N-methyltransferase CLF [Source:UniProtKB/Swiss-Prot;Acc:P93831]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.