CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG96530
KRH28444
KRH28654
KRH31789
KRH68267
KRH68336
KRH69214
KRH77020

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35670.1	KRG96530	AT1G02580.1	15456723
AT2G35670.1	KRH28654	AT1G02580.1	15456723
AT2G35670.1	KRH31789	AT1G02580.1	15456723
AT2G35670.1	KRH68267	AT1G02580.1	15456723
AT2G35670.1	KRH68336	AT1G02580.1	15456723
AT2G35670.1	KRH69214	AT1G02580.1	15456723
AT2G35670.1	KRG96530	AT1G02580.1	16924116
AT2G35670.1	KRH28654	AT1G02580.1	16924116
AT2G35670.1	KRH31789	AT1G02580.1	16924116
AT2G35670.1	KRH68267	AT1G02580.1	16924116
AT2G35670.1	KRH68336	AT1G02580.1	16924116
AT2G35670.1	KRH69214	AT1G02580.1	16924116
AT2G35670.1	KRH28444	AT2G23380.1	15456723
AT2G35670.1	KRH77020	AT2G23380.1	15456723
AT2G35670.1	KRH28444	AT2G23380.1	16924116
AT2G35670.1	KRH77020	AT2G23380.1	16924116
AT4G16845.1	KRH28444	AT2G23380.1	15456723
AT4G16845.1	KRH77020	AT2G23380.1	15456723

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28171	Soybean	nucleus	94.39	95.06
TraesCSU01G224600.1	Wheat	nucleus	20.56	70.97
TraesCSU01G194400.1	Wheat	nucleus	20.56	70.97
GSMUA_Achr2P11140_001	Banana	cytosol	16.59	63.96
CDY43476	Canola	nucleus	20.33	58.39
CDY71414	Canola	nucleus	41.59	44.28
CDX76587	Canola	nucleus	41.12	41.61
Bra021078.1-P	Field mustard	nucleus	41.12	41.41
AT4G16845.1	Thale cress	nucleus	40.89	39.77
TraesCS4D01G183300.1	Wheat	nucleus	11.21	37.5
KRH33365	Soybean	nucleus	51.64	36.35
Os09t0306800-01	Rice	cytosol, nucleus	50.23	35.48
KRG90126	Soybean	nucleus	50.23	35.36
TraesCS5D01G388900.1	Wheat	nucleus	10.51	35.16
KXG37542	Sorghum	nucleus	49.3	35.11
TraesCS2D01G000600.1	Wheat	cytosol	48.6	34.49
TraesCS2A01G000100.1	Wheat	nucleus	48.36	34.27
TraesCS2B01G023900.1	Wheat	cytosol	47.43	33.83
OQU89244	Sorghum	nucleus	49.53	33.81
HORVU2Hr1G000010.32	Barley	nucleus	47.66	33.66
HORVU5Hr1G054730.1	Barley	nucleus	49.77	33.44
TraesCS5A01G179600.1	Wheat	nucleus	49.53	33.23
TraesCS5D01G184200.2	Wheat	nucleus	49.3	33.07
Zm00001d034036_P003	Maize	golgi	46.03	32.35
TraesCS5B01G177400.2	Wheat	nucleus	49.53	32.27
Os04t0162100-01	Rice	nucleus	45.33	31.09
Zm00001d020036_P002	Maize	nucleus	49.53	30.95
CDX84180	Canola	cytosol	14.25	27.85
Bra005316.1-P	Field mustard	nucleus	15.42	27.85
TraesCS2A01G002500.1	Wheat	nucleus	42.06	27.78
TraesCS2B01G020400.3	Wheat	nucleus	41.59	27.73
HORVU2Hr1G000390.20	Barley	nucleus	41.82	27.08
KXG25810	Sorghum	nucleus	37.85	26.73
CDY42943	Canola	nucleus	26.64	24.52
Bra040097.1-P	Field mustard	nucleus	26.64	24.52
CDY35632	Canola	cytosol	25.47	24.11
CDY31712	Canola	nucleus	18.93	23.21
CDY33160	Canola	nucleus	24.3	22.61
CDX75032	Canola	mitochondrion, nucleus	19.39	21.73
Bra005262.1-P	Field mustard	mitochondrion	19.16	21.47
CDX84179	Canola	cytosol	18.69	19.61
KRH34601	Soybean	nucleus	29.67	16.2
TraesCS3B01G073800.1	Wheat	nucleus	8.18	13.67
AT2G35670.1	Thale cress	nucleus	20.09	11.39

Protein Annotations

EntrezGene:100807112	MapMan:12.3.3.1.1.3	MapMan:15.5.15	EMBL:ACUP02000669	EnsemblPlantsGene:GLYMA_01G206000	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003682	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0031490	UniProt:I1J9S4	EnsemblPlants:KRH77315	ProteinID:KRH77315
ProteinID:KRH77315.1	ProteinID:KRH77316.1	PFAM:PF09733	PANTHER:PTHR22597	PANTHER:PTHR22597:SF8	InterPro:Polycomb_protein_VEFS-Box
UniParc:UPI00023373F5	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:53837423..53851318

Molecular Weight (calculated)

49624.2 Da

IEP (calculated)

8.178

GRAVY (calculated)

-0.565

Length

428 amino acids

Sequence
(BLAST)

001: MCRQNSPVHH AGEEEIAADE SLLIYCKPVE LYNILYRRAL QNPSFLRRCL RYKIRASRKR RLRAGIVIFN YRDRYNILRK TEVTEDFSCP FCLMQCGNFK
101: GLRFHLCSSH DLFNFEFWVT EDYQAVNVSV KIDILRSENV ADGVIPQSQT FFFCSRPRKR RRKDSVQIEK RTNVKFLELD SPEGIHNGFL QKDDDILSCK
201: GENVSRTSRS EKIFPSGRND GGKFGPDHPG TMDNLEHVES SFNIPGVSIA MPQSSVDPEC SKSICKSDPA LPAKTKKLSM DRSDSRNRML LQKRLFFHSH
301: RVQPMALEQV LSDRDSEDEV DDDIADLEDR RMLDDFVDVS KDEKQLMHLW NSFMRKQRVL ADGHVPWACE AFSKLHGKEL ISSPALFWCW RLFMIKLWNH
401: GLLDACTMNN CSIVLDSYRN EGSGTRKN

Best Arabidopsis Sequence Match ( AT4G16845.1 )
(BLAST)

001: MCRQNCRAKS SPEEVISTDE NLLIYCKPVR LYNIFHLRSL GNPSFLPRCL NYKIGAKRKR KSRSTGMVVF NYKDCNNTLQ RTEVREDCSC PFCSMLCGSF
101: KGLQFHLNSS HDLFEFEFKL LEEYQTVNVS VKLNSFIFEE EGSDDDKFEP FSLCSKPRKR RQRGGRNNTR RLKVCFLPLD SPSLANGTEN GIALLNDGNR
201: GLGYPEATEL AGQFEMTSNI PPAIAHSSLD AGAKVILTTE AVVPATKTRK LSAERSEARS HLLLQKRQFY HSHRVQPMAL EQVMSDRDSE DEVDDDVADF
301: EDRQMLDDFV DVNKDEKQFM HLWNSFVRKQ RVIADGHISW ACEVFSRFYE KELHCYSSLF WCWRLFLIKL WNHGLVDSAT INNCNTILEN CRNTSVTNNN
401: NNSVDHPSDS NTNNNNIVDH PNDIKNKNNV DNKDNNSRDK

Arabidopsis Description

VRN2Polycomb group protein VERNALIZATION 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8W5B1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.