Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra032169.1-P | |
| Bra036300.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G16845.1 | Bra032169.1-P | AT2G23380.1 | 15456723 |
| AT4G16845.1 | Bra036300.1-P | AT4G02020.1 | 15456723 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY42943 | Canola | nucleus | 100.0 | 100.0 |
| Bra021078.1-P | Field mustard | nucleus | 40.43 | 44.24 |
| GSMUA_Achr2P11140_001 | Banana | cytosol | 9.68 | 40.54 |
| AT4G16845.1 | Thale cress | nucleus | 37.85 | 40.0 |
| Bra005316.1-P | Field mustard | nucleus | 19.78 | 38.82 |
| TraesCSU01G194400.1 | Wheat | nucleus | 9.68 | 36.29 |
| TraesCSU01G224600.1 | Wheat | nucleus | 9.68 | 36.29 |
| Bra005262.1-P | Field mustard | mitochondrion | 22.58 | 27.49 |
| KRH77315 | Soybean | nucleus | 24.52 | 26.64 |
| KRH28171 | Soybean | nucleus | 24.3 | 26.59 |
| Bra015201.1-P | Field mustard | cytosol | 16.99 | 22.97 |
| KXG37542 | Sorghum | nucleus | 25.81 | 19.97 |
| Os09t0306800-01 | Rice | cytosol, nucleus | 25.81 | 19.8 |
| HORVU5Hr1G054730.1 | Barley | nucleus | 26.45 | 19.31 |
| TraesCS2B01G023900.1 | Wheat | cytosol | 24.52 | 19.0 |
| TraesCS5D01G184200.2 | Wheat | nucleus | 25.81 | 18.81 |
| TraesCS5A01G179600.1 | Wheat | nucleus | 25.81 | 18.81 |
| TraesCS5D01G388900.1 | Wheat | nucleus | 5.16 | 18.75 |
| TraesCS4D01G183300.1 | Wheat | nucleus | 5.16 | 18.75 |
| HORVU2Hr1G000010.32 | Barley | nucleus | 24.3 | 18.65 |
| TraesCS2D01G000600.1 | Wheat | cytosol | 24.09 | 18.57 |
| TraesCS2A01G000100.1 | Wheat | nucleus | 24.09 | 18.54 |
| Bra022541.1-P | Field mustard | nucleus | 25.16 | 18.51 |
| TraesCS5B01G177400.2 | Wheat | nucleus | 26.02 | 18.42 |
| Bra015200.1-P | Field mustard | nucleus, plastid | 24.95 | 18.35 |
| Zm00001d034036_P003 | Maize | golgi | 23.87 | 18.23 |
| OQU89244 | Sorghum | nucleus | 24.09 | 17.86 |
| Os04t0162100-01 | Rice | nucleus | 23.23 | 17.31 |
| Zm00001d020036_P002 | Maize | nucleus | 24.3 | 16.5 |
| KXG25810 | Sorghum | nucleus | 21.08 | 16.17 |
| TraesCS2B01G020400.3 | Wheat | nucleus | 20.86 | 15.11 |
| HORVU2Hr1G000390.20 | Barley | nucleus | 21.08 | 14.83 |
| TraesCS2A01G002500.1 | Wheat | nucleus | 20.43 | 14.66 |
| Bra029179.1-P | Field mustard | nucleus | 19.14 | 10.3 |
| TraesCS3B01G073800.1 | Wheat | nucleus | 4.3 | 7.81 |
Protein Annotations
| EnsemblPlants:Bra040097.1 | EnsemblPlants:Bra040097.1-P | EnsemblPlantsGene:Bra040097 | InterPro:Polycomb_protein_VEFS-Box | PANTHER:PTHR22597 | PANTHER:PTHR22597:SF8 |
| PFAM:PF09733 | SEG:seg | UniParc:UPI0002544325 | UniProt:M4FG70 | MapMan:12.3.3.1.1.3 | MapMan:15.5.15 |
Description
AT4G16845 (E=1e-036) VRN2 | VRN2 (REDUCED VERNALIZATION RESPONSE 2); transcription factor
Coordinates
chrA01:+:10680325..10683260
Molecular Weight (calculated)
53029.3 Da
IEP (calculated)
4.822
GRAVY (calculated)
-0.638
Length
465 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQEDSQAKS SHDGEKHWMY LKPVRLYDML LCDSPSKQRF LRRNLNYKNQ EKGETRSASA GMVLFNFKDF DNKVQKTQGQ LVSVLPGLQL HLNSFHELLE
101: FEFMTSEENQ TVNVSVRLDA FKTKVIFYKL GNLRKPYNCL KYYSKPFKRT QVGGRNIPKR LNVTILPMDP PFLADDTETG TSLLNNGNPV AMMNVPDIGQ
201: SSGSGARESE GPAAKTRKLS EGTSEARRTS LLQTRQFYHS RTLQPMTLEE VMSDQDSDDE VDDEVADFEY RHMIDDLEDV SPTEKDFMHL WKSFVRYQRV
301: ITDGQVPWAC EAFSKFHKKE FIESKPLHSC WRMFMIKLLE YGLIDAVTIN KCNLIIEDSE DDHSVNTNNN NSVDYGNNSV DYGIDLNRND TMDVDHIGVD
401: LGIGLGRNTA MDVNNNNVDR GIDLNLTMNV NPSNVDRGID LNRNDVMDAD EDVNDSSYLS LSLSL
101: FEFMTSEENQ TVNVSVRLDA FKTKVIFYKL GNLRKPYNCL KYYSKPFKRT QVGGRNIPKR LNVTILPMDP PFLADDTETG TSLLNNGNPV AMMNVPDIGQ
201: SSGSGARESE GPAAKTRKLS EGTSEARRTS LLQTRQFYHS RTLQPMTLEE VMSDQDSDDE VDDEVADFEY RHMIDDLEDV SPTEKDFMHL WKSFVRYQRV
301: ITDGQVPWAC EAFSKFHKKE FIESKPLHSC WRMFMIKLLE YGLIDAVTIN KCNLIIEDSE DDHSVNTNNN NSVDYGNNSV DYGIDLNRND TMDVDHIGVD
401: LGIGLGRNTA MDVNNNNVDR GIDLNLTMNV NPSNVDRGID LNRNDVMDAD EDVNDSSYLS LSLSL
001: MCRQNCRAKS SPEEVISTDE NLLIYCKPVR LYNIFHLRSL GNPSFLPRCL NYKIGAKRKR KSRSTGMVVF NYKDCNNTLQ RTEVREDCSC PFCSMLCGSF
101: KGLQFHLNSS HDLFEFEFKL LEEYQTVNVS VKLNSFIFEE EGSDDDKFEP FSLCSKPRKR RQRGGRNNTR RLKVCFLPLD SPSLANGTEN GIALLNDGNR
201: GLGYPEATEL AGQFEMTSNI PPAIAHSSLD AGAKVILTTE AVVPATKTRK LSAERSEARS HLLLQKRQFY HSHRVQPMAL EQVMSDRDSE DEVDDDVADF
301: EDRQMLDDFV DVNKDEKQFM HLWNSFVRKQ RVIADGHISW ACEVFSRFYE KELHCYSSLF WCWRLFLIKL WNHGLVDSAT INNCNTILEN CRNTSVTNNN
401: NNSVDHPSDS NTNNNNIVDH PNDIKNKNNV DNKDNNSRDK
101: KGLQFHLNSS HDLFEFEFKL LEEYQTVNVS VKLNSFIFEE EGSDDDKFEP FSLCSKPRKR RQRGGRNNTR RLKVCFLPLD SPSLANGTEN GIALLNDGNR
201: GLGYPEATEL AGQFEMTSNI PPAIAHSSLD AGAKVILTTE AVVPATKTRK LSAERSEARS HLLLQKRQFY HSHRVQPMAL EQVMSDRDSE DEVDDDVADF
301: EDRQMLDDFV DVNKDEKQFM HLWNSFVRKQ RVIADGHISW ACEVFSRFYE KELHCYSSLF WCWRLFLIKL WNHGLVDSAT INNCNTILEN CRNTSVTNNN
401: NNSVDHPSDS NTNNNNIVDH PNDIKNKNNV DNKDNNSRDK
Arabidopsis Description
VRN2Polycomb group protein VERNALIZATION 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8W5B1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.