Factsheet for Bra005262.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 4
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra032169.1-P
Bra032592.1-P
Bra033334.1-P
Bra036300.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35670.1	Bra032592.1-P	AT1G02580.1	15456723
AT2G35670.1	Bra033334.1-P	AT1G02580.1	15456723
AT2G35670.1	Bra032592.1-P	AT1G02580.1	16924116
AT2G35670.1	Bra033334.1-P	AT1G02580.1	16924116
AT2G35670.1	Bra032169.1-P	AT2G23380.1	15456723
AT2G35670.1	Bra032169.1-P	AT2G23380.1	16924116
AT2G35670.1	Bra036300.1-P	AT4G02020.1	15456723
AT2G35670.1	Bra036300.1-P	AT4G02020.1	16924116

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75032	Canola	mitochondrion, nucleus	99.21	99.21
Bra005316.1-P	Field mustard	nucleus	35.86	57.81
GSMUA_Achr2P11140_001	Banana	cytosol	8.9	30.63
TraesCSU01G224600.1	Wheat	nucleus	8.64	26.61
TraesCSU01G194400.1	Wheat	nucleus	8.64	26.61
Bra021078.1-P	Field mustard	nucleus	27.75	24.94
Bra040097.1-P	Field mustard	nucleus	27.49	22.58
KRH28171	Soybean	nucleus	21.47	19.29
KRH77315	Soybean	nucleus	21.47	19.16
Bra015201.1-P	Field mustard	cytosol	13.87	15.41
KXG37542	Sorghum	nucleus	20.42	12.98
Zm00001d034036_P003	Maize	golgi	20.16	12.64
Os09t0306800-01	Rice	cytosol, nucleus	19.63	12.38
Os04t0162100-01	Rice	nucleus	20.16	12.34
TraesCS2B01G023900.1	Wheat	cytosol	19.37	12.33
AT2G35670.1	Thale cress	nucleus	24.08	12.19
TraesCS2D01G000600.1	Wheat	cytosol	19.11	12.11
TraesCS2A01G000100.1	Wheat	nucleus	19.11	12.09
HORVU2Hr1G000010.32	Barley	nucleus	19.11	12.05
Bra015200.1-P	Field mustard	nucleus, plastid	19.9	12.03
OQU89244	Sorghum	nucleus	19.63	11.96
HORVU5Hr1G054730.1	Barley	nucleus	19.9	11.93
TraesCS5A01G179600.1	Wheat	nucleus	19.63	11.76
TraesCS5D01G184200.2	Wheat	nucleus	19.63	11.76
KXG25810	Sorghum	nucleus	18.32	11.55
TraesCS5B01G177400.2	Wheat	nucleus	19.63	11.42
Bra022541.1-P	Field mustard	nucleus	18.59	11.23
Zm00001d020036_P002	Maize	nucleus	19.63	10.95
HORVU2Hr1G000390.20	Barley	nucleus	18.85	10.89
TraesCS2B01G020400.3	Wheat	nucleus	18.06	10.75
TraesCS2A01G002500.1	Wheat	nucleus	18.06	10.65
TraesCS4D01G183300.1	Wheat	nucleus	2.88	8.59
TraesCS5D01G388900.1	Wheat	nucleus	2.88	8.59
Bra029179.1-P	Field mustard	nucleus	14.92	6.6
TraesCS3B01G073800.1	Wheat	nucleus	0.52	0.78

Protein Annotations

EnsemblPlants:Bra005262.1	EnsemblPlants:Bra005262.1-P	EnsemblPlantsGene:Bra005262	InterPro:Polycomb_protein_VEFS-Box	ncoils:Coil	PANTHER:PTHR22597
PANTHER:PTHR22597:SF8	PFAM:PF09733	SEG:seg	UniParc:UPI0002547B8C	UniProt:M4CM25	MapMan:12.3.3.1.1.3
MapMan:15.5.15	:	:	:	:	:

Description

AT5G51230 (E=2e-046) EMF2, VEF2, CYR1 | EMF2 (EMBRYONIC FLOWER 2); DNA binding / transcription factor

Coordinates

chrA05:+:4352909..4355012

Molecular Weight (calculated)

43807.3 Da

IEP (calculated)

9.372

GRAVY (calculated)

-0.708

Length

382 amino acids

Sequence
(BLAST)

001: MNCNNIILRS QVVKRTSCPF CRMKCGSLKG VKHHLTSSHA LFDFNFRLSE NGHPMFDVSV KPDAFKNGVQ NDDLEEHNRV NTYFYRSKSR MRGQRGIPKG
101: RKWCKIFEKY SEDVPRDKAN EIPHVNGDNI PSSLARTRLS GQTSDIQTVT QLEIGQSSKA KRPRATGRKR LNPRRLEAER TDLLRSRQFY HSKTLQPMTL
201: EEVLSAADSD NENDKEFKDF QERMKIDRLV DASDDEKRFM VLWNTFMDDQ SVYADKHVPW ACEQFVKHHA KELITPKLSW QWRMFAIDTL CIKYGLISPK
301: TMDKCSIILQ KAQLEEEFPE EAAAAAEMEA LEEAEAAAEA AAKAAAKASA AKGTRKSARI QKKKMQEAER ALAMVCVRDL HF

Best Arabidopsis Sequence Match ( AT2G35670.1 )
(BLAST)

001: MARKSIRGKE VVMVSDDDDD DDDDVDDDKN IIKCVKPLTV YKNLETPTDS DDNDDDDDDD VDVDENIIKY IKPVAVYKKL ETRSKNNPYF LRRSLKYIIQ
101: AKKKKKSNSG GKIRFNYRDV SNKMTLKAEV VENFSCPFCL IPCGGHEGLQ LHLKSSHDAF KFEFYRAEKD HGPEVDVSVK SDTIKFGVLK DDVGNPQLSP
201: LTFCSKNRNQ RRQRDDSNNV KKLNVLLMEL DLDDLPRGTE NDSTHVNDDN VSSPPRAHSS EKISDILTTT QLAIAESSEP KVPHVNDGNV SSPPRAHSSA
301: EKNESTHVND DDDVSSPPRA HSLEKNESTH VNEDNISSPP KAHSSKKNES THMNDEDVSF PPRTRSSKET SDILTTTQPA IVEPSEPKVR RVSRRKQLYA
401: KRYKARETQP AIAESSEPKV LHVNDENVSS PPEAHSLEKA SDILTTTQPA IAESSEPKVP HVNDENVSST PRAHSSKKNK STRKNVDNVP SPPKTRSSKK
501: TSDILTTTQP TIAESSEPKV RHVNDDNVSS TPRAHSSKKN KSTRKNDDNI PSPPKTRSSK KTSNILATTQ PAKAEPSEPK VTRVSRRKEL HAERCEAKRL
601: ERLKGRQFYH SQTMQPITFE QVMSNEDSEN ETDDYALDIS ERLRLERLVG VSKEEKRYMY LWNIFVRKQR VIADGHVPWA CEEFAKLHKE EMKNSSSFDW
701: WWRMFRIKLW NNGLICAKTF HKCTTILLSN SDEAGQFTSG SAANANNQQS MEVDE

Arabidopsis Description

FIS2Polycomb group protein FERTILIZATION-INDEPENDENT SEED 2 [Source:UniProtKB/Swiss-Prot;Acc:P0DKJ8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.