Factsheet for HORVU2Hr1G000390.20

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
iPSORT:	plastid
MultiLoc:	cytosol
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G110110.2
HORVU4Hr1G053740.8
HORVU7Hr1G026840.1
HORVU7Hr1G026910.29
HORVU7Hr1G031800.2
HORVU7Hr1G073410.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35670.1	HORVU4Hr1G053740.8	AT1G02580.1	15456723
AT2G35670.1	HORVU4Hr1G053740.8	AT1G02580.1	16924116
AT2G35670.1	HORVU7Hr1G026840.1	AT2G23380.1	15456723
AT2G35670.1	HORVU7Hr1G026910.29	AT2G23380.1	15456723
AT2G35670.1	HORVU7Hr1G026840.1	AT2G23380.1	16924116
AT2G35670.1	HORVU7Hr1G026910.29	AT2G23380.1	16924116
AT2G35670.1	HORVU4Hr1G053740.8	AT4G02020.1	15456723
AT2G35670.1	HORVU4Hr1G053740.8	AT4G02020.1	16924116
AT4G16845.1	HORVU7Hr1G026840.1	AT2G23380.1	15456723
AT4G16845.1	HORVU7Hr1G026910.29	AT2G23380.1	15456723
AT4G16845.1	HORVU4Hr1G053740.8	AT4G02020.1	15456723
AT5G51230.1	HORVU3Hr1G110110.2	AT1G30530.1	23778966
AT5G51230.1	HORVU7Hr1G031800.2	AT1G30530.1	23778966
AT5G51230.1	HORVU7Hr1G026840.1	AT2G23380.1	15456723
AT5G51230.1	HORVU7Hr1G026910.29	AT2G23380.1	15456723
AT5G51230.1	HORVU7Hr1G073410.1	AT3G20740.1	23778966
AT5G51230.1	HORVU4Hr1G053740.8	AT4G02020.1	15456723
AT5G51230.1	HORVU4Hr1G053740.8	AT4G02020.1	23778966

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G020400.3	Wheat	nucleus	80.79	83.18
TraesCS2A01G002500.1	Wheat	nucleus	80.48	82.1
VIT_00s1675g00010.t01	Wine grape	cytosol	12.1	64.52
HORVU5Hr1G054730.1	Barley	nucleus	55.52	57.61
HORVU2Hr1G000010.32	Barley	nucleus	49.32	53.8
Os04t0162100-01	Rice	nucleus	50.08	53.04
KXG25810	Sorghum	nucleus	44.33	48.35
CDY43476	Canola	nucleus	10.44	46.31
GSMUA_Achr4P29640_001	Banana	nucleus	42.81	42.75
VIT_16s0013g00860.t01	Wine grape	nucleus	42.51	42.45
KRH28171	Soybean	nucleus	26.93	41.88
KRH77315	Soybean	nucleus	27.08	41.82
VIT_02s0234g00050.t01	Wine grape	nucleus	23.75	41.64
Solyc03g093640.2.1	Tomato	nucleus	39.64	41.07
GSMUA_Achr2P11170_001	Banana	nucleus	42.66	40.87
AT5G51230.1	Thale cress	nucleus	38.88	40.73
CDY16330	Canola	nucleus	38.73	40.51
Bra022541.1-P	Field mustard	nucleus	38.73	40.51
CDX91573	Canola	nucleus	38.43	40.32
CDY00460	Canola	nucleus, plastid	38.43	40.19
Bra015200.1-P	Field mustard	nucleus, plastid	38.43	40.19
CDX99960	Canola	nucleus	38.28	40.03
KRH33365	Soybean	nucleus	34.64	37.66
KRG90126	Soybean	nucleus	34.49	37.5
CDY00458	Canola	cytosol	17.4	33.43
Bra015201.1-P	Field mustard	cytosol	17.4	33.43
VIT_02s0234g00020.t01	Wine grape	cytosol, extracellular, nucleus	11.5	32.76
CDY71414	Canola	nucleus	19.36	31.84
CDX76587	Canola	nucleus	19.36	30.26
Bra021078.1-P	Field mustard	nucleus	19.06	29.65
AT4G16845.1	Thale cress	nucleus	19.67	29.55
CDX84180	Canola	cytosol	9.08	27.4
Bra005316.1-P	Field mustard	nucleus	9.23	25.74
CDY42943	Canola	nucleus	14.83	21.08
Bra040097.1-P	Field mustard	nucleus	14.83	21.08
CDY35632	Canola	cytosol	14.22	20.8
CDY33160	Canola	nucleus	14.37	20.65
CDY31712	Canola	nucleus	10.74	20.34
CDY38857	Canola	nucleus	22.09	19.62
KRH34601	Soybean	nucleus	22.69	19.13
CDX75032	Canola	mitochondrion, nucleus	10.89	18.85
Bra005262.1-P	Field mustard	mitochondrion	10.89	18.85
Bra029179.1-P	Field mustard	nucleus	23.3	17.82
CDX84179	Canola	cytosol	10.89	17.65
AT4G16810.1	Thale cress	nucleus	6.51	14.33
AT2G35670.1	Thale cress	nucleus	13.92	12.19

Protein Annotations

EnsemblPlants:HORVU2Hr1G000390.20	EnsemblPlantsGene:HORVU2Hr1G000390	InterPro:Polycomb_protein_VEFS-Box	PANTHER:PTHR22597	PANTHER:PTHR22597:SF0	PFAM:PF09733
SEG:seg	UniParc:UPI000B4779BA	UniProt:A0A287GUW3	MapMan:12.3.3.1.1.3	MapMan:15.5.15	:

Description

No Description!

Coordinates

chrchr2H:-:1021350..1032930

Molecular Weight (calculated)

74405.4 Da

IEP (calculated)

8.029

GRAVY (calculated)

-0.526

Length

661 amino acids

Sequence
(BLAST)

001: MPGLALPNHD AANNGCGFSY TRSTEQTCGQ KSRAQLSPDD ELTAKESLAL YCKPVELYNL IRQRAIKKPP SLQRCLRYKI DAKRKKRIQI SVSISRSTHT
101: QLPAHGIFPL HVLLARSSKD VPGEGHSPMY RFSRAFVLTS FRESGDSDHT EATFTVPNMK NLSTSQGSSV NIILVSCGRG GQNLGENCSE NHTEYSSPQK
201: LGGQCFWGKI PIDSLGSSLD CLTLSLGRTV ELTSEISMSP GFIEPSLLEH GSCLTFCSLK ADATGSYKLK ASIDVQEAGA RDMRLSPYNA YSYDDVPLSL
301: LPKILRLRTG NVLFNYKYYK NLHKSEVTEG FTCPFCLVPC GSFKGLECHL TSSHDLFHFE FWVVSKEYQA VNVSLKSDAK RGELLTIAGN DPGNRVFFYR
401: SSRFKRYKIS ETPTEKIKDV HPHITVPGSP GMTMPVDQDI VELRSPRNTV PAPTQMTESR SSEDGQKGSE VDYVPKENGI NVPEASIDPH RLLPGRNHSE
501: PTALQSDRAR KLPVDLDDPS LVLLKKREFF HSQKAQRMEM DVLYSDHDSE DELDHDIADF EDRTLLNGFS DVAKEEKRIM HLWNSFKRRQ RILADGHIPW
601: ACEAFTHQHG QELVQNPRLR WCWRVLMIKL WNHGLLNGRT MNICNKHLES LASQSADPKW S

Best Arabidopsis Sequence Match ( AT4G16845.1 )
(BLAST)

001: MCRQNCRAKS SPEEVISTDE NLLIYCKPVR LYNIFHLRSL GNPSFLPRCL NYKIGAKRKR KSRSTGMVVF NYKDCNNTLQ RTEVREDCSC PFCSMLCGSF
101: KGLQFHLNSS HDLFEFEFKL LEEYQTVNVS VKLNSFIFEE EGSDDDKFEP FSLCSKPRKR RQRGGRNNTR RLKVCFLPLD SPSLANGTEN GIALLNDGNR
201: GLGYPEATEL AGQFEMTSNI PPAIAHSSLD AGAKVILTTE AVVPATKTRK LSAERSEARS HLLLQKRQFY HSHRVQPMAL EQVMSDRDSE DEVDDDVADF
301: EDRQMLDDFV DVNKDEKQFM HLWNSFVRKQ RVIADGHISW ACEVFSRFYE KELHCYSSLF WCWRLFLIKL WNHGLVDSAT INNCNTILEN CRNTSVTNNN
401: NNSVDHPSDS NTNNNNIVDH PNDIKNKNNV DNKDNNSRDK

Arabidopsis Description

VRN2Polycomb group protein VERNALIZATION 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8W5B1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.