Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY43476 | Canola | nucleus | 24.09 | 71.14 |
| CDY71414 | Canola | nucleus | 63.86 | 69.9 |
| Bra021078.1-P | Field mustard | nucleus | 65.45 | 67.76 |
| CDX76587 | Canola | nucleus | 64.55 | 67.14 |
| GSMUA_Achr2P11140_001 | Banana | cytosol | 12.73 | 50.45 |
| TraesCSU01G224600.1 | Wheat | nucleus | 12.73 | 45.16 |
| TraesCSU01G194400.1 | Wheat | nucleus | 12.73 | 45.16 |
| KRH28171 | Soybean | nucleus | 40.0 | 41.41 |
| KRH77315 | Soybean | nucleus | 39.77 | 40.89 |
| CDY35632 | Canola | cytosol | 39.32 | 38.27 |
| Bra040097.1-P | Field mustard | nucleus | 40.0 | 37.85 |
| CDY42943 | Canola | nucleus | 40.0 | 37.85 |
| Os09t0306800-01 | Rice | cytosol, nucleus | 39.09 | 28.38 |
| TraesCS4D01G183300.1 | Wheat | nucleus | 8.18 | 28.12 |
| KXG37542 | Sorghum | nucleus | 37.73 | 27.62 |
| TraesCS5D01G388900.1 | Wheat | nucleus | 7.95 | 27.34 |
| AT5G51230.1 | Thale cress | nucleus | 38.86 | 27.1 |
| TraesCS2D01G000600.1 | Wheat | cytosol | 36.82 | 26.87 |
| TraesCS2B01G023900.1 | Wheat | cytosol | 36.36 | 26.67 |
| TraesCS2A01G000100.1 | Wheat | nucleus | 36.59 | 26.66 |
| HORVU2Hr1G000010.32 | Barley | nucleus | 36.59 | 26.57 |
| HORVU5Hr1G054730.1 | Barley | nucleus | 38.41 | 26.53 |
| OQU89244 | Sorghum | nucleus | 37.73 | 26.48 |
| AT4G16810.1 | Thale cress | nucleus | 17.95 | 26.33 |
| TraesCS5A01G179600.1 | Wheat | nucleus | 37.73 | 26.02 |
| TraesCS5D01G184200.2 | Wheat | nucleus | 37.73 | 26.02 |
| TraesCS5B01G177400.2 | Wheat | nucleus | 37.73 | 25.27 |
| Zm00001d034036_P003 | Maize | golgi | 34.77 | 25.12 |
| Zm00001d020036_P002 | Maize | nucleus | 37.95 | 24.38 |
| Os04t0162100-01 | Rice | nucleus | 32.27 | 22.76 |
| KXG25810 | Sorghum | nucleus | 27.95 | 20.3 |
| TraesCS2A01G002500.1 | Wheat | nucleus | 29.55 | 20.06 |
| TraesCS2B01G020400.3 | Wheat | nucleus | 28.86 | 19.78 |
| HORVU2Hr1G000390.20 | Barley | nucleus | 29.55 | 19.67 |
| AT2G35670.1 | Thale cress | nucleus | 25.91 | 15.1 |
| TraesCS3B01G073800.1 | Wheat | nucleus | 7.27 | 12.5 |
Protein Annotations
| MapMan:12.3.3.1.1.3 | MapMan:15.5.15 | EntrezGene:827392 | ProteinID:AEE83814.1 | EMBL:AF284500 | EMBL:AF284501 |
| ArrayExpress:AT4G16845 | EnsemblPlantsGene:AT4G16845 | RefSeq:AT4G16845 | TAIR:AT4G16845 | RefSeq:AT4G16845-TAIR-G | EnsemblPlants:AT4G16845.1 |
| TAIR:AT4G16845.1 | EMBL:AY034902 | EMBL:AY063047 | Unigene:At.19153 | ProteinID:CAB10457.1 | ProteinID:CAB80955.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003682 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 |
| GO:GO:0005677 | GO:GO:0006139 | GO:GO:0006349 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006950 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009409 | GO:GO:0009628 | GO:GO:0009987 |
| GO:GO:0010048 | GO:GO:0031490 | GO:GO:0040029 | GO:GO:0046872 | RefSeq:NP_567517.1 | PFAM:PF09733 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR22597 | PANTHER:PTHR22597:SF8 | InterPro:Polycomb_protein_VEFS-Box |
| UniProt:Q8W5B1 | UniParc:UPI0000033BCA | Symbol:VRN2 | SEG:seg | : | : |
Description
VRN2Polycomb group protein VERNALIZATION 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8W5B1]
Coordinates
chr4:+:9476069..9479878
Molecular Weight (calculated)
50626.5 Da
IEP (calculated)
7.100
GRAVY (calculated)
-0.670
Length
440 amino acids
Sequence
(BLAST)
(BLAST)
001: MCRQNCRAKS SPEEVISTDE NLLIYCKPVR LYNIFHLRSL GNPSFLPRCL NYKIGAKRKR KSRSTGMVVF NYKDCNNTLQ RTEVREDCSC PFCSMLCGSF
101: KGLQFHLNSS HDLFEFEFKL LEEYQTVNVS VKLNSFIFEE EGSDDDKFEP FSLCSKPRKR RQRGGRNNTR RLKVCFLPLD SPSLANGTEN GIALLNDGNR
201: GLGYPEATEL AGQFEMTSNI PPAIAHSSLD AGAKVILTTE AVVPATKTRK LSAERSEARS HLLLQKRQFY HSHRVQPMAL EQVMSDRDSE DEVDDDVADF
301: EDRQMLDDFV DVNKDEKQFM HLWNSFVRKQ RVIADGHISW ACEVFSRFYE KELHCYSSLF WCWRLFLIKL WNHGLVDSAT INNCNTILEN CRNTSVTNNN
401: NNSVDHPSDS NTNNNNIVDH PNDIKNKNNV DNKDNNSRDK
101: KGLQFHLNSS HDLFEFEFKL LEEYQTVNVS VKLNSFIFEE EGSDDDKFEP FSLCSKPRKR RQRGGRNNTR RLKVCFLPLD SPSLANGTEN GIALLNDGNR
201: GLGYPEATEL AGQFEMTSNI PPAIAHSSLD AGAKVILTTE AVVPATKTRK LSAERSEARS HLLLQKRQFY HSHRVQPMAL EQVMSDRDSE DEVDDDVADF
301: EDRQMLDDFV DVNKDEKQFM HLWNSFVRKQ RVIADGHISW ACEVFSRFYE KELHCYSSLF WCWRLFLIKL WNHGLVDSAT INNCNTILEN CRNTSVTNNN
401: NNSVDHPSDS NTNNNNIVDH PNDIKNKNNV DNKDNNSRDK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.