Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS4D01G183300.1 | Wheat | nucleus | 95.31 | 95.31 |
CDY43476 | Canola | nucleus | 25.0 | 21.48 |
VIT_02s0234g00020.t01 | Wine grape | cytosol, extracellular, nucleus | 27.34 | 15.09 |
TraesCS3B01G073800.1 | Wheat | nucleus | 28.91 | 14.45 |
TraesCSU01G075500.1 | Wheat | nucleus | 29.69 | 11.91 |
CDX84180 | Canola | cytosol | 19.53 | 11.42 |
KRH77315 | Soybean | nucleus | 35.16 | 10.51 |
TraesCS2D01G000600.1 | Wheat | cytosol | 49.22 | 10.45 |
KRH28171 | Soybean | nucleus | 32.81 | 9.88 |
CDY71414 | Canola | nucleus | 28.12 | 8.96 |
CDX76587 | Canola | nucleus | 28.12 | 8.51 |
Bra021078.1-P | Field mustard | nucleus | 28.12 | 8.47 |
Os09t0306800-01 | Rice | cytosol, nucleus | 39.84 | 8.42 |
KXG37542 | Sorghum | nucleus | 38.28 | 8.15 |
TraesCS5D01G184200.2 | Wheat | nucleus | 40.62 | 8.15 |
HORVU5Hr1G054730.1 | Barley | nucleus | 39.84 | 8.01 |
AT4G16845.1 | Thale cress | nucleus | 27.34 | 7.95 |
VIT_16s0013g00860.t01 | Wine grape | nucleus | 38.28 | 7.4 |
GSMUA_Achr2P11170_001 | Banana | nucleus | 39.06 | 7.25 |
Solyc03g093640.2.1 | Tomato | nucleus | 35.94 | 7.21 |
OQU89244 | Sorghum | nucleus | 35.16 | 7.18 |
GSMUA_Achr4P29640_001 | Banana | nucleus | 36.72 | 7.1 |
AT5G51230.1 | Thale cress | nucleus | 33.59 | 6.81 |
Bra015200.1-P | Field mustard | nucleus, plastid | 33.59 | 6.8 |
CDX99960 | Canola | nucleus | 33.59 | 6.8 |
CDY00460 | Canola | nucleus, plastid | 33.59 | 6.8 |
CDY16330 | Canola | nucleus | 32.81 | 6.65 |
Bra022541.1-P | Field mustard | nucleus | 32.81 | 6.65 |
KRG90126 | Soybean | nucleus | 31.25 | 6.58 |
KRH33365 | Soybean | nucleus | 31.25 | 6.58 |
Zm00001d020036_P002 | Maize | nucleus | 35.16 | 6.57 |
CDX91573 | Canola | nucleus | 31.25 | 6.35 |
CDY33160 | Canola | nucleus | 21.88 | 6.09 |
Bra005316.1-P | Field mustard | nucleus | 10.94 | 5.91 |
CDY35632 | Canola | cytosol | 20.31 | 5.75 |
VIT_00s1675g00010.t01 | Wine grape | cytosol | 5.47 | 5.65 |
CDY42943 | Canola | nucleus | 18.75 | 5.16 |
Bra040097.1-P | Field mustard | nucleus | 18.75 | 5.16 |
VIT_02s0234g00050.t01 | Wine grape | nucleus | 14.84 | 5.04 |
Zm00001d034036_P003 | Maize | golgi | 22.66 | 4.76 |
CDY31712 | Canola | nucleus | 10.94 | 4.01 |
KRH34601 | Soybean | nucleus | 24.22 | 3.95 |
CDY38857 | Canola | nucleus | 21.88 | 3.76 |
CDY00458 | Canola | cytosol | 9.38 | 3.49 |
Bra015201.1-P | Field mustard | cytosol | 9.38 | 3.49 |
CDX84179 | Canola | cytosol | 10.16 | 3.19 |
AT2G35670.1 | Thale cress | nucleus | 18.75 | 3.18 |
Bra029179.1-P | Field mustard | nucleus | 21.09 | 3.12 |
CDX75032 | Canola | mitochondrion, nucleus | 8.59 | 2.88 |
Bra005262.1-P | Field mustard | mitochondrion | 8.59 | 2.88 |
AT4G16810.1 | Thale cress | nucleus | 3.91 | 1.67 |
Protein Annotations
EnsemblPlants:TraesCS5D01G388900.1 | EnsemblPlantsGene:TraesCS5D01G388900 | PANTHER:PTHR22597 | PANTHER:PTHR22597:SF8 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr5D:-:458280212..458285066
Molecular Weight (calculated)
14186.2 Da
IEP (calculated)
9.252
GRAVY (calculated)
-0.223
Length
128 amino acids
Sequence
(BLAST)
(BLAST)
001: MCRQPSTIQL SPNEQLANEE TFKLHCKPVE LCIVIRKRAI DNPAFLQRCL RYMIQASHKK RNTRVGCLDC CLPVLSSASG RLDVIMGNGH SWPSAVLTPA
101: SSTYSSRTPL ASRVCTVEGW WPSSPAGR
101: SSTYSSRTPL ASRVCTVEGW WPSSPAGR
001: MPGIPLVSRE TSSCSRSTEQ MCHEDSRLRI SEEEEIAAEE SLAAYCKPVE LYNIIQRRAI RNPLFLQRCL HYKIEAKHKR RIQMTVFLSG AIDAGVQTQK
101: LFPLYILLAR LVSPKPVAEY SAVYRFSRAC ILTGGLGVDG VSQAQANFLL PDMNRLALEA KSGSLAILFI SFAGAQNSQF GIDSGKIHSG NIGGHCLWSK
201: IPLQSLYASW QKSPNMDLGQ RVDTVSLVEM QPCFIKLKSM SEEKCVSIQV PSNPLTSSSP QQVQVTISAE EVGSTEKSPY SSFSYNDISS SSLLQIIRLR
301: TGNVVFNYRY YNNKLQKTEV TEDFSCPFCL VKCASFKGLR YHLPSTHDLL NFEFWVTEEF QAVNVSLKTE TMISKVNEDD VDPKQQTFFF SRRRQKSQVR
401: SSRQGPHLGL GCEVLDKTDD AHSVRSEKSR IPPGKHYERI GGAESGQRVP PGTSPADVQS CGDPDYVQSI AGSTMLQFAK TRKISIERSD LRNRSLLQKR
501: QFFHSHRAQP MALEQVLSDR DSEDEVDDDV ADFEDRRMLD DFVDVTKDEK QMMHMWNSFV RKQRVLADGH IPWACEAFSR LHGPIMVRTP HLIWCWRVFM
601: VKLWNHGLLD ARTMNNCNTF LEQLQI
101: LFPLYILLAR LVSPKPVAEY SAVYRFSRAC ILTGGLGVDG VSQAQANFLL PDMNRLALEA KSGSLAILFI SFAGAQNSQF GIDSGKIHSG NIGGHCLWSK
201: IPLQSLYASW QKSPNMDLGQ RVDTVSLVEM QPCFIKLKSM SEEKCVSIQV PSNPLTSSSP QQVQVTISAE EVGSTEKSPY SSFSYNDISS SSLLQIIRLR
301: TGNVVFNYRY YNNKLQKTEV TEDFSCPFCL VKCASFKGLR YHLPSTHDLL NFEFWVTEEF QAVNVSLKTE TMISKVNEDD VDPKQQTFFF SRRRQKSQVR
401: SSRQGPHLGL GCEVLDKTDD AHSVRSEKSR IPPGKHYERI GGAESGQRVP PGTSPADVQS CGDPDYVQSI AGSTMLQFAK TRKISIERSD LRNRSLLQKR
501: QFFHSHRAQP MALEQVLSDR DSEDEVDDDV ADFEDRRMLD DFVDVTKDEK QMMHMWNSFV RKQRVLADGH IPWACEAFSR LHGPIMVRTP HLIWCWRVFM
601: VKLWNHGLLD ARTMNNCNTF LEQLQI
Arabidopsis Description
EMF2Polycomb group protein EMBRYONIC FLOWER 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8L6Y4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.