Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G028200.2 | Wheat | nucleus | 98.31 | 98.31 |
| TraesCS7A01G128300.1 | Wheat | nucleus | 97.97 | 97.97 |
| HORVU7Hr1G026840.1 | Barley | cytosol, mitochondrion, nucleus | 96.96 | 93.58 |
| Os06t0275500-01 | Rice | nucleus | 78.24 | 77.46 |
| EER89265 | Sorghum | plastid | 79.03 | 75.13 |
| Zm00001d036296_P004 | Maize | nucleus, plastid | 76.66 | 69.11 |
| GSMUA_AchrUn_... | Banana | nucleus | 59.19 | 68.09 |
| VIT_07s0031g00320.t01 | Wine grape | nucleus | 60.09 | 61.05 |
| KRH77020 | Soybean | nucleus | 58.29 | 60.05 |
| KRH28444 | Soybean | nucleus | 58.06 | 59.81 |
| TraesCS7D01G127400.1 | Wheat | nucleus | 52.65 | 58.23 |
| Solyc03g044380.2.1 | Tomato | nucleus | 56.6 | 54.51 |
| PGSC0003DMT400084490 | Potato | nucleus | 56.37 | 54.23 |
| AT2G23380.1 | Thale cress | nucleus | 54.79 | 53.88 |
| Bra032169.1-P | Field mustard | nucleus, plastid | 54.79 | 53.58 |
| CDY38942 | Canola | nucleus, plastid | 54.79 | 53.58 |
| CDX89569 | Canola | nucleus, plastid | 54.68 | 53.3 |
| PGSC0003DMT400010235 | Potato | nucleus | 42.05 | 45.54 |
| TraesCS4D01G184600.3 | Wheat | nucleus, plastid | 41.71 | 41.57 |
| TraesCS7D01G443000.1 | Wheat | nucleus | 6.65 | 17.46 |
| TraesCS5D01G184500.1 | Wheat | nucleus | 6.76 | 16.9 |
| TraesCS3D01G369900.1 | Wheat | plastid | 6.99 | 13.75 |
| TraesCS7D01G318100.1 | Wheat | nucleus | 5.98 | 12.47 |
| TraesCS2D01G300800.1 | Wheat | nucleus | 6.99 | 12.35 |
| TraesCS3D01G237600.2 | Wheat | nucleus | 11.84 | 10.27 |
| TraesCS6D01G202600.1 | Wheat | nucleus | 8.79 | 10.22 |
| TraesCS3D01G144300.2 | Wheat | plastid | 10.94 | 9.76 |
| TraesCS5D01G170100.5 | Wheat | nucleus, plastid | 10.37 | 8.14 |
| TraesCS5D01G051200.1 | Wheat | nucleus, plastid | 9.92 | 6.81 |
| TraesCS2D01G007100.1 | Wheat | nucleus | 11.16 | 5.4 |
| TraesCS5D01G366700.1 | Wheat | plastid | 11.27 | 5.16 |
Protein Annotations
| KEGG:00310+2.1.1.43 | MapMan:12.3.3.1.1.4 | MapMan:12.3.3.3 | Gene3D:2.170.270.10 | InterPro:CXC_dom | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0031519 | InterPro:Hist-Lys_N-MeTrfase_EZ | InterPro:IPR001214 | InterPro:IPR025778 | InterPro:IPR026489 | PFAM:PF00856 |
| PFscan:PS50280 | PFscan:PS51576 | PFscan:PS51633 | PANTHER:PTHR22884 | PANTHER:PTHR22884:SF237 | InterPro:SET_dom |
| SMART:SM00317 | SMART:SM01114 | SUPFAM:SSF82199 | InterPro:Tesmin/TSO1-like_CXC | EnsemblPlantsGene:TraesCS7D01G127100 | EnsemblPlants:TraesCS7D01G127100.2 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr7D:-:79541616..79548962
Molecular Weight (calculated)
99308.7 Da
IEP (calculated)
8.320
GRAVY (calculated)
-0.813
Length
887 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEEERSEAS RHVLRVIDSL KKKVTADRFT YIKNRIEDNK IKLSPVTQGT GNSSKIWQRN TSNSTDSNLL TSRQDDVLSS GPRIVVSPAD EDGVSSDEES
101: SYAASTVMLG GNLAAKNVTR PIKLPEAPKI PPYTTWTFLD RNQRMTEDQS VLGRRRIYYD ANCGEALICS DSEDEAVEDE EEKKEFKVSE DCLIRMTIQE
201: CGMSDAVLET LARCFDRAAG DIKARYEILN GEKTEGSLKK VSVPNAKVED LYRDKDLDAA LDSFDNLFCR RCLVFDCKLH GCSQDLVFPT EKQPPWNSLD
301: DGIPCGIHCY KLAPKPDATT TVDSDMLDIE EPTHSSDNTR NQLSSNKKKQ GSSGKKAKSQ QSEGSSTQRV ASESSDSEGH PTSTKSPQQS SCQSKVKISP
401: KGGIRKSTNR RIAERILMSV KKGHREVAPS DSNSGGCLWP RDMKLRSDTR NGHKDSVASP QQNSPSTRSS RKKDAPQMEN SLASGEDRND STEETKNEHS
501: ATDGHDSSMI EDVEENICRQ ENKCRSWKVI EQGLLVKGLE IFGRNSCLIA RNLLCGMKTC SDVFQYMSYI ENSSASGTLS RGDSLVKGYI KGHELRVRSR
601: FIRRRGRVRR LKYTWKSAGY HFIRKRITER KDQPCRQYNP CGCQSSCGKQ CPCLVNGTCC EKYCGCPKMC KNRFRGCHCA KSQCRSRQCP CFAADRECDP
701: DVCRNCWVGC GDGSLGVPSQ RGDNYECRNM KLLLKQQQRV LLGRSDVSGW GAFLKNTVSK HEYLGEYTGE LISHKEADKR GKIYDRENSS FLFNLNNEFV
801: LDAFRMGDKL KFANHSPDPN CYAKVIMVAG DHRVGIFAKE RIGSGEEIFY DYCYEPDRAP VWARKPDAPG AKDPGQPSSG RAKKLAH
101: SYAASTVMLG GNLAAKNVTR PIKLPEAPKI PPYTTWTFLD RNQRMTEDQS VLGRRRIYYD ANCGEALICS DSEDEAVEDE EEKKEFKVSE DCLIRMTIQE
201: CGMSDAVLET LARCFDRAAG DIKARYEILN GEKTEGSLKK VSVPNAKVED LYRDKDLDAA LDSFDNLFCR RCLVFDCKLH GCSQDLVFPT EKQPPWNSLD
301: DGIPCGIHCY KLAPKPDATT TVDSDMLDIE EPTHSSDNTR NQLSSNKKKQ GSSGKKAKSQ QSEGSSTQRV ASESSDSEGH PTSTKSPQQS SCQSKVKISP
401: KGGIRKSTNR RIAERILMSV KKGHREVAPS DSNSGGCLWP RDMKLRSDTR NGHKDSVASP QQNSPSTRSS RKKDAPQMEN SLASGEDRND STEETKNEHS
501: ATDGHDSSMI EDVEENICRQ ENKCRSWKVI EQGLLVKGLE IFGRNSCLIA RNLLCGMKTC SDVFQYMSYI ENSSASGTLS RGDSLVKGYI KGHELRVRSR
601: FIRRRGRVRR LKYTWKSAGY HFIRKRITER KDQPCRQYNP CGCQSSCGKQ CPCLVNGTCC EKYCGCPKMC KNRFRGCHCA KSQCRSRQCP CFAADRECDP
701: DVCRNCWVGC GDGSLGVPSQ RGDNYECRNM KLLLKQQQRV LLGRSDVSGW GAFLKNTVSK HEYLGEYTGE LISHKEADKR GKIYDRENSS FLFNLNNEFV
801: LDAFRMGDKL KFANHSPDPN CYAKVIMVAG DHRVGIFAKE RIGSGEEIFY DYCYEPDRAP VWARKPDAPG AKDPGQPSSG RAKKLAH
001: MASEASPSSS ATRSEPPKDS PAEERGPASK EVSEVIESLK KKLAADRCIS IKKRIDENKK NLFAITQSFM RSSMERGGSC KDGSDLLVKR QRDSPGMKSG
101: IDESNNNRYV EDGPASSGMV QGSSVPVKIS LRPIKMPDIK RLSPYTTWVF LDRNQRMTED QSVVGRRRIY YDQTGGEALI CSDSEEEAID DEEEKRDFLE
201: PEDYIIRMTL EQLGLSDSVL AELASFLSRS TSEIKARHGV LMKEKEVSES GDNQAESSLL NKDMEGALDS FDNLFCRRCL VFDCRLHGCS QDLIFPAEKP
301: APWCPPVDEN LTCGANCYKT LLKSGRFPGY GTIEGKTGTS SDGAGTKTTP TKFSSKLNGR KPKTFPSESA SSNEKCALET SDSENGLQQD TNSDKVSSSP
401: KVKGSGRRVG RKRNKNRVAE RVPRKTQKRQ KKTEASDSDS IASGSCSPSD AKHKDNEDAT SSSQKHVKSG NSGKSRKNGT PAEVSNNSVK DDVPVCQSNE
501: VASELDAPGS DESLRKEEFM GETVSRGRLA TNKLWRPLEK SLFDKGVEIF GMNSCLIARN LLSGFKSCWE VFQYMTCSEN KASFFGGDGL NPDGSSKFDI
601: NGNMVNNQVR RRSRFLRRRG KVRRLKYTWK SAAYHSIRKR ITEKKDQPCR QFNPCNCKIA CGKECPCLLN GTCCEKYCGC PKSCKNRFRG CHCAKSQCRS
701: RQCPCFAADR ECDPDVCRNC WVIGGDGSLG VPSQRGDNYE CRNMKLLLKQ QQRVLLGISD VSGWGAFLKN SVSKHEYLGE YTGELISHKE ADKRGKIYDR
801: ENCSFLFNLN DQFVLDAYRK GDKLKFANHS PEPNCYAKVI MVAGDHRVGI FAKERILAGE ELFYDYRYEP DRAPAWAKKP EAPGSKKDEN VTPSVGRPKK
901: LA
101: IDESNNNRYV EDGPASSGMV QGSSVPVKIS LRPIKMPDIK RLSPYTTWVF LDRNQRMTED QSVVGRRRIY YDQTGGEALI CSDSEEEAID DEEEKRDFLE
201: PEDYIIRMTL EQLGLSDSVL AELASFLSRS TSEIKARHGV LMKEKEVSES GDNQAESSLL NKDMEGALDS FDNLFCRRCL VFDCRLHGCS QDLIFPAEKP
301: APWCPPVDEN LTCGANCYKT LLKSGRFPGY GTIEGKTGTS SDGAGTKTTP TKFSSKLNGR KPKTFPSESA SSNEKCALET SDSENGLQQD TNSDKVSSSP
401: KVKGSGRRVG RKRNKNRVAE RVPRKTQKRQ KKTEASDSDS IASGSCSPSD AKHKDNEDAT SSSQKHVKSG NSGKSRKNGT PAEVSNNSVK DDVPVCQSNE
501: VASELDAPGS DESLRKEEFM GETVSRGRLA TNKLWRPLEK SLFDKGVEIF GMNSCLIARN LLSGFKSCWE VFQYMTCSEN KASFFGGDGL NPDGSSKFDI
601: NGNMVNNQVR RRSRFLRRRG KVRRLKYTWK SAAYHSIRKR ITEKKDQPCR QFNPCNCKIA CGKECPCLLN GTCCEKYCGC PKSCKNRFRG CHCAKSQCRS
701: RQCPCFAADR ECDPDVCRNC WVIGGDGSLG VPSQRGDNYE CRNMKLLLKQ QQRVLLGISD VSGWGAFLKN SVSKHEYLGE YTGELISHKE ADKRGKIYDR
801: ENCSFLFNLN DQFVLDAYRK GDKLKFANHS PEPNCYAKVI MVAGDHRVGI FAKERILAGE ELFYDYRYEP DRAPAWAKKP EAPGSKKDEN VTPSVGRPKK
901: LA
Arabidopsis Description
CLFHistone-lysine N-methyltransferase CLF [Source:UniProtKB/Swiss-Prot;Acc:P93831]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.