Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400049479 | |
| PGSC0003DMT400061016 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400084490 | Potato | nucleus | 63.49 | 56.4 |
| VIT_07s0031g00320.t01 | Wine grape | nucleus | 55.07 | 51.66 |
| KRH77020 | Soybean | nucleus | 50.92 | 48.43 |
| KRH28444 | Soybean | nucleus | 50.55 | 48.08 |
| GSMUA_AchrUn_... | Banana | nucleus | 43.83 | 46.56 |
| AT2G23380.1 | Thale cress | nucleus | 49.45 | 44.9 |
| Bra032169.1-P | Field mustard | nucleus, plastid | 48.84 | 44.1 |
| CDY38942 | Canola | nucleus, plastid | 48.84 | 44.1 |
| CDX89569 | Canola | nucleus, plastid | 48.96 | 44.07 |
| Os06t0275500-01 | Rice | nucleus | 46.64 | 42.63 |
| TraesCS7A01G128300.1 | Wheat | nucleus | 45.67 | 42.16 |
| TraesCS7D01G127100.2 | Wheat | nucleus | 45.54 | 42.05 |
| TraesCS7B01G028200.2 | Wheat | nucleus | 44.93 | 41.49 |
| EER89265 | Sorghum | plastid | 46.76 | 41.05 |
| HORVU7Hr1G026840.1 | Barley | cytosol, mitochondrion, nucleus | 45.05 | 40.15 |
| Zm00001d036296_P004 | Maize | nucleus, plastid | 45.67 | 38.01 |
| HORVU7Hr1G026910.29 | Barley | cytosol, nucleus | 35.65 | 37.1 |
| TraesCS7A01G128600.1 | Wheat | nucleus | 35.65 | 36.45 |
| TraesCS7B01G028500.2 | Wheat | nucleus | 35.65 | 36.41 |
| TraesCS7D01G127400.1 | Wheat | nucleus | 35.29 | 36.03 |
| PGSC0003DMT400023342 | Potato | nucleus | 34.31 | 33.9 |
| PGSC0003DMT400028986 | Potato | endoplasmic reticulum, extracellular | 3.17 | 13.83 |
| PGSC0003DMT400059166 | Potato | nucleus | 5.13 | 13.82 |
| PGSC0003DMT400028514 | Potato | nucleus | 3.3 | 12.05 |
| PGSC0003DMT400086207 | Potato | nucleus | 3.42 | 11.24 |
| PGSC0003DMT400010951 | Potato | cytosol | 3.05 | 10.87 |
| PGSC0003DMT400059198 | Potato | nucleus | 4.64 | 10.61 |
| PGSC0003DMT400028500 | Potato | nucleus | 4.4 | 8.98 |
| PGSC0003DMT400046777 | Potato | nucleus | 6.96 | 8.86 |
| PGSC0003DMT400023546 | Potato | nucleus | 4.88 | 5.68 |
Protein Annotations
| KEGG:00310+2.1.1.43 | MapMan:12.3.3.3 | Gene3D:2.170.270.10 | InterPro:CXC_dom | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0031519 |
| InterPro:Hist-Lys_N-MeTrfase_EZ | InterPro:IPR001214 | InterPro:IPR025778 | InterPro:IPR026489 | UniProt:M0ZXQ3 | PFAM:PF00856 |
| EnsemblPlantsGene:PGSC0003DMG400004008 | PGSC:PGSC0003DMG400004008 | EnsemblPlants:PGSC0003DMT400010235 | PFscan:PS50280 | PFscan:PS51633 | PANTHER:PTHR22884 |
| PANTHER:PTHR22884:SF237 | InterPro:SANT/Myb | InterPro:SET_dom | SMART:SM00317 | SMART:SM00717 | SMART:SM01114 |
| SUPFAM:SSF82199 | InterPro:Tesmin/TSO1-like_CXC | UniParc:UPI0002969CE2 | SEG:seg | : | : |
Description
PHCLF2 [Source:PGSC_GENE;Acc:PGSC0003DMG400004008]
Coordinates
chr2:+:43561825..43570544
Molecular Weight (calculated)
92096.5 Da
IEP (calculated)
6.630
GRAVY (calculated)
-0.638
Length
819 amino acids
Sequence
(BLAST)
(BLAST)
001: MLYCFGQIDA PEGTTIEADE FLSVTESLKG QFASKRADYV KKRTEENAQK AYDLGEFFLK LSTERKNLIV HGADISIDLL SKRQQDVINM QTGIGSSNGD
101: NDSNSYEDDG YASSEIRLGS SIAVNSAVCP IILPQVERLP QYTTWVFLDR NQEMPVNQSV VGCRRIYYDK NSGEALICSD SEEELLEDKQ EKQFVEYEDV
201: MLRSTIQQIG LSDTVLELLG QFLSRKPSEV KARYEDLVKD KHECPSKNES IQGTPDLFLD NDLDAALDSF DTLFCRRCLV FDCQSHGCSQ DLIFPILIVC
301: FTPYIHKAEK QLPWCSTDMD KEPCCSNCYR LKESEAGLTP SQIANHGENH VRPSEIANNT EVSGREHLSR TSNSCESESA SLIAKNISEN IGSELRLLCD
401: ITTVQRSASP SNRKSDSKVG STKGKCKRIA ENVLVATKKR QINLMAVESD YIASGSLVSK DLNLHSNSHK DFKDVGSCSL ESQQPQCGRT SRRDVSPVLS
501: SKNSLQGEGF GCQYEEAASE KNGMNHDDTL RENEFGDENN CNQEIDGDKP WRPLEKALFE KGLEMFGRSS CMIARNLLNG LKTCWEVFQY MNNSENKLSL
601: VSDGVNGMLQ GSFKGDGHTI VGNQPRRKSR FLHRRGRVRR LKYTGKSAGY NALRKRISQR KDKLCRHYNP CQCRSRQCPC FAVDRECDPD VCRNCWISCG
701: DGTLDIPPQR GDNNDCENMK LLLKQHQRVL LGRSDVSGWG AFLKCVLDAY RKGDKLKFAN HSPDPNCYPK VIMAGGDHKV GIFAKQRICA GEELFYDYCY
801: APDTPHVWAR KPEAPTTRK
101: NDSNSYEDDG YASSEIRLGS SIAVNSAVCP IILPQVERLP QYTTWVFLDR NQEMPVNQSV VGCRRIYYDK NSGEALICSD SEEELLEDKQ EKQFVEYEDV
201: MLRSTIQQIG LSDTVLELLG QFLSRKPSEV KARYEDLVKD KHECPSKNES IQGTPDLFLD NDLDAALDSF DTLFCRRCLV FDCQSHGCSQ DLIFPILIVC
301: FTPYIHKAEK QLPWCSTDMD KEPCCSNCYR LKESEAGLTP SQIANHGENH VRPSEIANNT EVSGREHLSR TSNSCESESA SLIAKNISEN IGSELRLLCD
401: ITTVQRSASP SNRKSDSKVG STKGKCKRIA ENVLVATKKR QINLMAVESD YIASGSLVSK DLNLHSNSHK DFKDVGSCSL ESQQPQCGRT SRRDVSPVLS
501: SKNSLQGEGF GCQYEEAASE KNGMNHDDTL RENEFGDENN CNQEIDGDKP WRPLEKALFE KGLEMFGRSS CMIARNLLNG LKTCWEVFQY MNNSENKLSL
601: VSDGVNGMLQ GSFKGDGHTI VGNQPRRKSR FLHRRGRVRR LKYTGKSAGY NALRKRISQR KDKLCRHYNP CQCRSRQCPC FAVDRECDPD VCRNCWISCG
701: DGTLDIPPQR GDNNDCENMK LLLKQHQRVL LGRSDVSGWG AFLKCVLDAY RKGDKLKFAN HSPDPNCYPK VIMAGGDHKV GIFAKQRICA GEELFYDYCY
801: APDTPHVWAR KPEAPTTRK
001: MASEASPSSS ATRSEPPKDS PAEERGPASK EVSEVIESLK KKLAADRCIS IKKRIDENKK NLFAITQSFM RSSMERGGSC KDGSDLLVKR QRDSPGMKSG
101: IDESNNNRYV EDGPASSGMV QGSSVPVKIS LRPIKMPDIK RLSPYTTWVF LDRNQRMTED QSVVGRRRIY YDQTGGEALI CSDSEEEAID DEEEKRDFLE
201: PEDYIIRMTL EQLGLSDSVL AELASFLSRS TSEIKARHGV LMKEKEVSES GDNQAESSLL NKDMEGALDS FDNLFCRRCL VFDCRLHGCS QDLIFPAEKP
301: APWCPPVDEN LTCGANCYKT LLKSGRFPGY GTIEGKTGTS SDGAGTKTTP TKFSSKLNGR KPKTFPSESA SSNEKCALET SDSENGLQQD TNSDKVSSSP
401: KVKGSGRRVG RKRNKNRVAE RVPRKTQKRQ KKTEASDSDS IASGSCSPSD AKHKDNEDAT SSSQKHVKSG NSGKSRKNGT PAEVSNNSVK DDVPVCQSNE
501: VASELDAPGS DESLRKEEFM GETVSRGRLA TNKLWRPLEK SLFDKGVEIF GMNSCLIARN LLSGFKSCWE VFQYMTCSEN KASFFGGDGL NPDGSSKFDI
601: NGNMVNNQVR RRSRFLRRRG KVRRLKYTWK SAAYHSIRKR ITEKKDQPCR QFNPCNCKIA CGKECPCLLN GTCCEKYCGC PKSCKNRFRG CHCAKSQCRS
701: RQCPCFAADR ECDPDVCRNC WVIGGDGSLG VPSQRGDNYE CRNMKLLLKQ QQRVLLGISD VSGWGAFLKN SVSKHEYLGE YTGELISHKE ADKRGKIYDR
801: ENCSFLFNLN DQFVLDAYRK GDKLKFANHS PEPNCYAKVI MVAGDHRVGI FAKERILAGE ELFYDYRYEP DRAPAWAKKP EAPGSKKDEN VTPSVGRPKK
901: LA
101: IDESNNNRYV EDGPASSGMV QGSSVPVKIS LRPIKMPDIK RLSPYTTWVF LDRNQRMTED QSVVGRRRIY YDQTGGEALI CSDSEEEAID DEEEKRDFLE
201: PEDYIIRMTL EQLGLSDSVL AELASFLSRS TSEIKARHGV LMKEKEVSES GDNQAESSLL NKDMEGALDS FDNLFCRRCL VFDCRLHGCS QDLIFPAEKP
301: APWCPPVDEN LTCGANCYKT LLKSGRFPGY GTIEGKTGTS SDGAGTKTTP TKFSSKLNGR KPKTFPSESA SSNEKCALET SDSENGLQQD TNSDKVSSSP
401: KVKGSGRRVG RKRNKNRVAE RVPRKTQKRQ KKTEASDSDS IASGSCSPSD AKHKDNEDAT SSSQKHVKSG NSGKSRKNGT PAEVSNNSVK DDVPVCQSNE
501: VASELDAPGS DESLRKEEFM GETVSRGRLA TNKLWRPLEK SLFDKGVEIF GMNSCLIARN LLSGFKSCWE VFQYMTCSEN KASFFGGDGL NPDGSSKFDI
601: NGNMVNNQVR RRSRFLRRRG KVRRLKYTWK SAAYHSIRKR ITEKKDQPCR QFNPCNCKIA CGKECPCLLN GTCCEKYCGC PKSCKNRFRG CHCAKSQCRS
701: RQCPCFAADR ECDPDVCRNC WVIGGDGSLG VPSQRGDNYE CRNMKLLLKQ QQRVLLGISD VSGWGAFLKN SVSKHEYLGE YTGELISHKE ADKRGKIYDR
801: ENCSFLFNLN DQFVLDAYRK GDKLKFANHS PEPNCYAKVI MVAGDHRVGI FAKERILAGE ELFYDYRYEP DRAPAWAKKP EAPGSKKDEN VTPSVGRPKK
901: LA
Arabidopsis Description
CLFHistone-lysine N-methyltransferase CLF [Source:UniProtKB/Swiss-Prot;Acc:P93831]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.