Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G127400.1 | Wheat | nucleus | 96.01 | 96.01 |
| TraesCS7A01G128600.1 | Wheat | nucleus | 93.14 | 93.26 |
| HORVU7Hr1G026910.29 | Barley | cytosol, nucleus | 80.92 | 82.47 |
| GSMUA_AchrUn_... | Banana | nucleus | 51.62 | 53.7 |
| TraesCS7B01G028200.2 | Wheat | nucleus | 58.98 | 53.33 |
| Os06t0275500-01 | Rice | nucleus | 57.23 | 51.23 |
| EER89265 | Sorghum | plastid | 57.98 | 49.84 |
| KRH77020 | Soybean | nucleus | 50.87 | 47.39 |
| KRH28444 | Soybean | nucleus | 50.75 | 47.27 |
| VIT_07s0031g00320.t01 | Wine grape | nucleus | 50.25 | 46.16 |
| Zm00001d036296_P004 | Maize | nucleus, plastid | 54.99 | 44.82 |
| Solyc03g044380.2.1 | Tomato | nucleus | 50.37 | 43.87 |
| PGSC0003DMT400084490 | Potato | nucleus | 50.12 | 43.6 |
| AT2G23380.1 | Thale cress | nucleus | 48.75 | 43.35 |
| CDY38942 | Canola | nucleus, plastid | 48.5 | 42.89 |
| Bra032169.1-P | Field mustard | nucleus, plastid | 48.38 | 42.78 |
| CDX89569 | Canola | nucleus, plastid | 48.38 | 42.64 |
| TraesCS4B01G181400.3 | Wheat | nucleus, plastid | 40.15 | 36.18 |
| PGSC0003DMT400010235 | Potato | nucleus | 36.41 | 35.65 |
| TraesCS7B01G354300.1 | Wheat | nucleus | 6.98 | 16.47 |
| TraesCS5B01G177800.2 | Wheat | nucleus | 7.11 | 15.75 |
| TraesCS2B01G317900.1 | Wheat | nucleus | 7.36 | 11.15 |
| TraesCS6B01G249100.1 | Wheat | nucleus | 9.23 | 9.92 |
| TraesCS3B01G161800.3 | Wheat | plastid | 11.6 | 9.35 |
| TraesCS3B01G265800.1 | Wheat | nucleus | 11.85 | 9.24 |
| TraesCS5B01G163000.1 | Wheat | nucleus, plastid | 10.72 | 7.92 |
| TraesCS5B01G046300.1 | Wheat | nucleus, plastid | 9.85 | 6.1 |
| TraesCS5B01G360200.1 | Wheat | plastid | 10.97 | 4.56 |
| TraesCS2B01G015500.1 | Wheat | nucleus | 9.85 | 4.4 |
Protein Annotations
| KEGG:00310+2.1.1.43 | MapMan:12.3.3.1.1.4 | MapMan:12.3.3.3 | Gene3D:2.170.270.10 | InterPro:CXC_dom | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0031519 | InterPro:Hist-Lys_N-MeTrfase_EZ | InterPro:IPR001214 | InterPro:IPR025778 | InterPro:IPR026489 | PFAM:PF00856 |
| PFscan:PS50280 | PFscan:PS51576 | PFscan:PS51633 | PANTHER:PTHR22884 | PANTHER:PTHR22884:SF237 | InterPro:SANT/Myb |
| InterPro:SET_dom | SMART:SM00317 | SMART:SM00717 | SMART:SM01114 | SUPFAM:SSF82199 | InterPro:Tesmin/TSO1-like_CXC |
| EnsemblPlantsGene:TraesCS7B01G028500 | EnsemblPlants:TraesCS7B01G028500.2 | TIGR:cd00167 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr7B:-:26877824..26887222
Molecular Weight (calculated)
89460.8 Da
IEP (calculated)
7.171
GRAVY (calculated)
-0.717
Length
802 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPDRHRSPE SDGIRCIRSF SAVSNHTRVD LVPQDDEAIP DGELSEVSVS TYVNSLKNEF ATLRSAEIKD MVENNKIKLS TIMQSNRGSS TIWQTSALDG
101: TGLATNLLTP RQHDASCSTL GLELCLAEKD GGSSQEDSPY GTSTATLGGI LTAKNANKPI ELPKVSDLPP YTTWVFLDRN QRMTEDQSAF HRQNIYYNAH
201: CGEALMFSDS EDEVVEDEEE KREFKSSEDC FIRMTIDECG MSDEVLETLA QCFEKTAGDI KARYEILQGE NTESSSKEVS KLNAKLKDIY HDKDLAAALD
301: SFDNLFCRRC LVFDCKLHGC SQDLIFPAEK QSPWNSMDDV PCGIHCYKLA TKHKDSVAYS QHNSPSTRSS RKKDAHQMEN NSALVEDRNY LMVETNNEHS
401: ATDGHDSSRK EELVDKNICR QEDNLVSWMV IEKELLVKGV EIFGRNSCLI ARNLFDGEKS CSDVFQYMNY IENSSTSEGH GLGLGSRRPR KRGRVKHASR
501: STVYRFIRKR IAAMKGELRQ HYNPCGCQSA CGKQCPCLKN DTCCEKLCGC PKACKNRFRG CNCAKAQCRS RQCPCFAADR ECDPDVCRKC GVGCGDGSLG
601: VPNQRGDNYG CQNMKLLLRQ QQKVVLGRSD VSGWGAFVKN TVGKDDCLGE YTGELISHRE AAKRGQRYDR ENSSFLFNLN TEFVLDAFRM GNKLKFANHS
701: PDPNCYAKVM FVAGDHRVGI FANERINAGK EIFYDYHYAP NEAPAWALKA DDATGAEDPG QSSSGSAKKV DTPGAKDPEQ SSSGRAKRPR KSSRGRPRKH
801: AR
101: TGLATNLLTP RQHDASCSTL GLELCLAEKD GGSSQEDSPY GTSTATLGGI LTAKNANKPI ELPKVSDLPP YTTWVFLDRN QRMTEDQSAF HRQNIYYNAH
201: CGEALMFSDS EDEVVEDEEE KREFKSSEDC FIRMTIDECG MSDEVLETLA QCFEKTAGDI KARYEILQGE NTESSSKEVS KLNAKLKDIY HDKDLAAALD
301: SFDNLFCRRC LVFDCKLHGC SQDLIFPAEK QSPWNSMDDV PCGIHCYKLA TKHKDSVAYS QHNSPSTRSS RKKDAHQMEN NSALVEDRNY LMVETNNEHS
401: ATDGHDSSRK EELVDKNICR QEDNLVSWMV IEKELLVKGV EIFGRNSCLI ARNLFDGEKS CSDVFQYMNY IENSSTSEGH GLGLGSRRPR KRGRVKHASR
501: STVYRFIRKR IAAMKGELRQ HYNPCGCQSA CGKQCPCLKN DTCCEKLCGC PKACKNRFRG CNCAKAQCRS RQCPCFAADR ECDPDVCRKC GVGCGDGSLG
601: VPNQRGDNYG CQNMKLLLRQ QQKVVLGRSD VSGWGAFVKN TVGKDDCLGE YTGELISHRE AAKRGQRYDR ENSSFLFNLN TEFVLDAFRM GNKLKFANHS
701: PDPNCYAKVM FVAGDHRVGI FANERINAGK EIFYDYHYAP NEAPAWALKA DDATGAEDPG QSSSGSAKKV DTPGAKDPEQ SSSGRAKRPR KSSRGRPRKH
801: AR
001: MEKENHEDDG EGLPPELNQI KEQIEKERFL HIKRKFELRY IPSVATHASH HQSFDLNQPA AEDDNGGDNK SLLSRMQNPL RHFSASSDYN SYEDQGYVLD
101: EDQDYALEED VPLFLDEDVP LLPSVKLPIV EKLPRSITWV FTKSSQLMAE SDSVIGKRQI YYLNGEALEL SSEEDEEDEE EDEEEIKKEK CEFSEDVDRF
201: IWTVGQDYGL DDLVVRRALA KYLEVDVSDI LERYNELKLK NDGTAGEASD LTSKTITTAF QDFADRRHCR RCMIFDCHMH EKYEPESRSS EDKSSLFEDE
301: DRQPCSEHCY LKVRSVTEAD HVMDNDNSIS NKIVVSDPNN TMWTPVEKDL YLKGIEIFGR NSCDVALNIL RGLKTCLEIY NYMREQDQCT MSLDLNKTTQ
401: RHNQVTKKVS RKSSRSVRKK SRLRKYARYP PALKKTTSGE AKFYKHYTPC TCKSKCGQQC PCLTHENCCE KYCGCSKDCN NRFGGCNCAI GQCTNRQCPC
501: FAANRECDPD LCRSCPLSCG DGTLGETPVQ IQCKNMQFLL QTNKKILIGK SDVHGWGAFT WDSLKKNEYL GEYTGELITH DEANERGRIE DRIGSSYLFT
601: LNDQLEIDAR RKGNEFKFLN HSARPNCYAK LMIVRGDQRI GLFAERAIEE GEELFFDYCY GPEHADWSRG REPRKTGASK RSKEARPAR
101: EDQDYALEED VPLFLDEDVP LLPSVKLPIV EKLPRSITWV FTKSSQLMAE SDSVIGKRQI YYLNGEALEL SSEEDEEDEE EDEEEIKKEK CEFSEDVDRF
201: IWTVGQDYGL DDLVVRRALA KYLEVDVSDI LERYNELKLK NDGTAGEASD LTSKTITTAF QDFADRRHCR RCMIFDCHMH EKYEPESRSS EDKSSLFEDE
301: DRQPCSEHCY LKVRSVTEAD HVMDNDNSIS NKIVVSDPNN TMWTPVEKDL YLKGIEIFGR NSCDVALNIL RGLKTCLEIY NYMREQDQCT MSLDLNKTTQ
401: RHNQVTKKVS RKSSRSVRKK SRLRKYARYP PALKKTTSGE AKFYKHYTPC TCKSKCGQQC PCLTHENCCE KYCGCSKDCN NRFGGCNCAI GQCTNRQCPC
501: FAANRECDPD LCRSCPLSCG DGTLGETPVQ IQCKNMQFLL QTNKKILIGK SDVHGWGAFT WDSLKKNEYL GEYTGELITH DEANERGRIE DRIGSSYLFT
601: LNDQLEIDAR RKGNEFKFLN HSARPNCYAK LMIVRGDQRI GLFAERAIEE GEELFFDYCY GPEHADWSRG REPRKTGASK RSKEARPAR
Arabidopsis Description
MEAHistone-lysine N-methyltransferase MEDEA [Source:UniProtKB/Swiss-Prot;Acc:O65312]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.