CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX75032
CDX76587
CDX84179
CDX84180
CDX88663
CDX91573
CDX99960
CDY00460
CDY02805
CDY16330
CDY27567
CDY31712
CDY32715
CDY33160
CDY35632
CDY42943
CDY43476
CDY43875
CDY53612
CDY58569
CDY62688
CDY71414

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G23380.1	CDX75032	AT2G35670.1	15456723
AT2G23380.1	CDX84179	AT2G35670.1	15456723
AT2G23380.1	CDX84180	AT2G35670.1	15456723
AT2G23380.1	CDY31712	AT2G35670.1	15456723
AT2G23380.1	CDY33160	AT2G35670.1	15456723
AT2G23380.1	CDY27567	AT3G20740.1	14871310
AT2G23380.1	CDY53612	AT3G20740.1	14871310
AT2G23380.1	CDY27567	AT3G20740.1	15456723
AT2G23380.1	CDY53612	AT3G20740.1	15456723
AT2G23380.1	CDY27567	AT3G20740.1	18812497
AT2G23380.1	CDY53612	AT3G20740.1	18812497
AT2G23380.1	CDX76587	AT4G16845.1	15456723
AT2G23380.1	CDY35632	AT4G16845.1	15456723
AT2G23380.1	CDY42943	AT4G16845.1	15456723
AT2G23380.1	CDY43476	AT4G16845.1	15456723
AT2G23380.1	CDY71414	AT4G16845.1	15456723
AT2G23380.1	CDX91573	AT5G51230.1	15456723
AT2G23380.1	CDX99960	AT5G51230.1	15456723
AT2G23380.1	CDY00460	AT5G51230.1	15456723
AT2G23380.1	CDY16330	AT5G51230.1	15456723
AT2G23380.1	CDX88663	AT5G58230.1	23778966
AT2G23380.1	CDY02805	AT5G58230.1	23778966
AT2G23380.1	CDY32715	AT5G58230.1	23778966
AT2G23380.1	CDY43875	AT5G58230.1	23778966
AT2G23380.1	CDY58569	AT5G58230.1	23778966
AT2G23380.1	CDY62688	AT5G58230.1	23778966

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032169.1-P	Field mustard	nucleus, plastid	99.67	99.67
CDX89569	Canola	nucleus, plastid	98.46	98.13
AT2G23380.1	Thale cress	nucleus	87.1	87.58
KRH28444	Soybean	nucleus	61.3	64.58
VIT_07s0031g00320.t01	Wine grape	nucleus	61.85	64.26
KRH77020	Soybean	nucleus	60.31	63.53
GSMUA_AchrUn_...	Banana	nucleus	51.05	60.05
PGSC0003DMT400084490	Potato	nucleus	58.32	57.38
Solyc03g044380.2.1	Tomato	nucleus	57.88	57.0
TraesCS7A01G128300.1	Wheat	nucleus	53.69	54.9
TraesCS7D01G127100.2	Wheat	nucleus	53.58	54.79
TraesCS7B01G028200.2	Wheat	nucleus	53.58	54.79
EER89265	Sorghum	plastid	55.57	54.02
Os06t0275500-01	Rice	nucleus	53.36	54.02
HORVU7Hr1G026840.1	Barley	cytosol, mitochondrion, nucleus	53.91	53.21
Zm00001d036296_P004	Maize	nucleus, plastid	54.47	50.2
PGSC0003DMT400010235	Potato	nucleus	44.1	48.84
TraesCS7B01G028500.2	Wheat	nucleus	42.89	48.5
TraesCS7D01G127400.1	Wheat	nucleus	42.23	47.76
TraesCS7A01G128600.1	Wheat	nucleus	42.01	47.57
HORVU7Hr1G026910.29	Barley	cytosol, nucleus	41.01	47.27
CDY07102	Canola	nucleus	41.57	44.04
CDY22021	Canola	nucleus	41.35	44.01
CDY15252	Canola	nucleus	21.17	43.34
CDY17381	Canola	nucleus	37.27	40.19
CDX89960	Canola	nucleus	25.47	36.21
CDY37467	Canola	nucleus	25.69	35.09
CDY32472	Canola	nucleus	24.81	34.99
CDX98400	Canola	nucleus	7.06	19.94
CDX67818	Canola	nucleus	6.84	19.31
CDX67669	Canola	cytosol, nucleus, plastid	5.4	19.07
CDY41194	Canola	nucleus	6.95	18.16
CDX83438	Canola	cytosol	7.06	17.34
CDX79778	Canola	cytosol	6.95	17.26
CDX71856	Canola	nucleus	6.84	17.22
CDX95590	Canola	nucleus	6.73	16.71
CDY17880	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	6.95	16.71
CDY36467	Canola	nucleus	8.6	15.76
CDY23260	Canola	nucleus	8.05	14.78
CDX87571	Canola	nucleus	7.06	13.88
CDX88310	Canola	nucleus	7.06	13.88
CDX92851	Canola	mitochondrion	12.24	12.12
CDY29869	Canola	mitochondrion	12.68	12.02
CDX95185	Canola	endoplasmic reticulum, nucleus	6.39	11.86
CDY35655	Canola	nucleus	12.35	11.5
CDY14381	Canola	nucleus	12.13	11.29
CDX67860	Canola	nucleus	10.92	10.27
CDY25072	Canola	nucleus	10.92	10.13
CDY15398	Canola	nucleus	10.92	9.57
CDY19078	Canola	nucleus	10.69	9.42
CDY06182	Canola	nucleus	10.92	9.32
CDY10007	Canola	nucleus	10.58	8.63
CDY52297	Canola	nucleus	9.92	6.99
CDX88357	Canola	nucleus	10.58	5.79
CDX87527	Canola	nucleus	10.47	5.73
CDX95184	Canola	cytosol	4.85	3.9

Protein Annotations

KEGG:00310+2.1.1.43	MapMan:12.3.3.1.1.4	MapMan:12.3.3.3	Gene3D:2.170.270.10	GO:A0A078HM18	UniProt:A0A078HM18
EnsemblPlants:CDY38942	ProteinID:CDY38942	ProteinID:CDY38942.1	InterPro:CXC_dom	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009987	GO:GO:0016043
GO:GO:0016740	GO:GO:0018024	GO:GO:0019538	GO:GO:0031519	GO:GO:0032259	GO:GO:0034968
EnsemblPlantsGene:GSBRNA2T00066992001	InterPro:Hist-Lys_N-MeTrfase_EZ	InterPro:IPR001214	InterPro:IPR025778	InterPro:IPR026489	PFAM:PF00856
PFscan:PS50280	PFscan:PS51576	PFscan:PS51633	PANTHER:PTHR22884	PANTHER:PTHR22884:SF237	InterPro:SET_dom
SMART:SM00317	SMART:SM01114	SUPFAM:SSF82199	InterPro:Tesmin/TSO1-like_CXC	UniParc:UPI0004EEC03F	SEG:seg

Description

BnaA04g13630DHistone-lysine N-methyltransferase [Source:UniProtKB/TrEMBL;Acc:A0A078HM18]

Coordinates

chrLK032435:+:207220..211964

Molecular Weight (calculated)

100730.0 Da

IEP (calculated)

8.977

GRAVY (calculated)

-0.876

Length

907 amino acids

Sequence
(BLAST)

001: MASGASPSSS ATRSDPHKHS TTSQAEKRAP ASKEVSAVID SLKKKLAADR CISIKRRIDE NKKNVRGITQ STMRSCMERG GGSYKDGSDL LVKRQRDSPG
101: MKSGVNASDA DKSNNHSSFL EDGNASSTTM VQGSSVPVKI SLRPIKMPDV KRLSPYTTWV FLDRNQRMTE DQSVVGRRRI YYDQTGGEAL ICSDSEEEAI
201: DEEDEKRAFL EPEDFIIRMT LDQLGLSDSV LEELANFLSR SSSEIKARYE VLMKEKEVSE SGDNQAESSL LNKDMDGALD SFDNLFCRRC LVFDCRLHGC
301: SQDLIFPAEK PAPWTPPVDE NLTCGANCYK TLLKSNRIPA NGTTEDKTGT SSDGAGTKTT SKFSGKLNRK KTKTFPSESA SSNEKCTPET SDSENGVQQD
401: TNPEKVSSSS KVKASGRRGG RKRNNNRVAE RVSRRTQKRQ KKSEASDTDS IATGSRSASD AKHKDNEDAT SSSQKHVKSG SSKNSRKNDT PVDDSKNSVK
501: GDDPFSQSNA VASEPCSDGS LRKEEFVGEN VCPGGLSEDK SWRPLEKSLF QKGVEIFGMN SCMIARNLLC GLKSCWEVFQ YMTCSENKAS FFGGDALNPD
601: GSSKFDINGN MTNNQVRRRS RFLRRRGKVR RLKYTWKSAA YHSIRKRSTD KKDQPCRQFN PCNCKTACGK ECTCLLNGTC CEKYCGCPKS CKNRFRGCHC
701: AKSQCRSRQC PCFAADRECD PDVCRNCWVI GGDGTLGVPS QRGDNYECRN MKLLLKQQQR VLLGISDVSG WGAFLKNSVS KHEYLGEYTG ELISHKEADK
801: RGKIYDRENS SFLFNLNDQA HAYRKGDKLK FANHSPEPNC YAKVIMVAGD HRVGIFAKER ILAGEELFYD YRYEPDRAPA WARKPEASGS KKDENVTPSV
901: GRPKKVA

Best Arabidopsis Sequence Match ( AT2G23380.1 )
(BLAST)

001: MASEASPSSS ATRSEPPKDS PAEERGPASK EVSEVIESLK KKLAADRCIS IKKRIDENKK NLFAITQSFM RSSMERGGSC KDGSDLLVKR QRDSPGMKSG
101: IDESNNNRYV EDGPASSGMV QGSSVPVKIS LRPIKMPDIK RLSPYTTWVF LDRNQRMTED QSVVGRRRIY YDQTGGEALI CSDSEEEAID DEEEKRDFLE
201: PEDYIIRMTL EQLGLSDSVL AELASFLSRS TSEIKARHGV LMKEKEVSES GDNQAESSLL NKDMEGALDS FDNLFCRRCL VFDCRLHGCS QDLIFPAEKP
301: APWCPPVDEN LTCGANCYKT LLKSGRFPGY GTIEGKTGTS SDGAGTKTTP TKFSSKLNGR KPKTFPSESA SSNEKCALET SDSENGLQQD TNSDKVSSSP
401: KVKGSGRRVG RKRNKNRVAE RVPRKTQKRQ KKTEASDSDS IASGSCSPSD AKHKDNEDAT SSSQKHVKSG NSGKSRKNGT PAEVSNNSVK DDVPVCQSNE
501: VASELDAPGS DESLRKEEFM GETVSRGRLA TNKLWRPLEK SLFDKGVEIF GMNSCLIARN LLSGFKSCWE VFQYMTCSEN KASFFGGDGL NPDGSSKFDI
601: NGNMVNNQVR RRSRFLRRRG KVRRLKYTWK SAAYHSIRKR ITEKKDQPCR QFNPCNCKIA CGKECPCLLN GTCCEKYCGC PKSCKNRFRG CHCAKSQCRS
701: RQCPCFAADR ECDPDVCRNC WVIGGDGSLG VPSQRGDNYE CRNMKLLLKQ QQRVLLGISD VSGWGAFLKN SVSKHEYLGE YTGELISHKE ADKRGKIYDR
801: ENCSFLFNLN DQFVLDAYRK GDKLKFANHS PEPNCYAKVI MVAGDHRVGI FAKERILAGE ELFYDYRYEP DRAPAWAKKP EAPGSKKDEN VTPSVGRPKK
901: LA

Arabidopsis Description

CLFHistone-lysine N-methyltransferase CLF [Source:UniProtKB/Swiss-Prot;Acc:P93831]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.