Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY32715 | Canola | nucleus | 89.26 | 89.9 |
| AT5G58230.1 | Thale cress | nucleus | 86.87 | 85.85 |
| VIT_16s0013g01550.t01 | Wine grape | nucleus | 82.58 | 81.6 |
| PGSC0003DMT400061016 | Potato | cytosol | 82.34 | 81.37 |
| CDY43875 | Canola | nucleus | 82.34 | 80.99 |
| Solyc01g104510.2.1 | Tomato | nucleus | 81.86 | 80.9 |
| KRH42369 | Soybean | nucleus | 80.91 | 79.76 |
| KRH58491 | Soybean | nucleus | 80.67 | 79.53 |
| GSMUA_Achr4P31680_001 | Banana | nucleus | 80.19 | 79.43 |
| CDY62688 | Canola | nucleus | 79.95 | 78.64 |
| Os03t0640100-01 | Rice | cytosol | 79.24 | 77.57 |
| TraesCS5D01G385600.1 | Wheat | nucleus | 79.0 | 77.34 |
| TraesCS5B01G378700.1 | Wheat | nucleus | 78.76 | 77.1 |
| TraesCSU01G072700.1 | Wheat | nucleus | 78.52 | 76.87 |
| Zm00001d033248_P002 | Maize | cytoskeleton, cytosol, nucleus | 78.52 | 76.33 |
| Zm00001d033247_P001 | Maize | nucleus | 78.28 | 76.1 |
| TraesCS5D01G385800.1 | Wheat | cytosol | 40.33 | 75.78 |
| Zm00001d033252_P001 | Maize | cytosol, nucleus, plastid | 20.53 | 73.5 |
| Zm00001d013702_P001 | Maize | nucleus | 75.18 | 73.09 |
| GSMUA_Achr5P02390_001 | Banana | cytosol | 69.45 | 69.29 |
| CDX88663 | Canola | nucleus | 85.44 | 56.29 |
| CDY58569 | Canola | cytosol | 85.44 | 56.29 |
| OQU91278 | Sorghum | cytosol, nucleus, plastid | 78.76 | 54.28 |
| CDY47479 | Canola | cytosol | 51.79 | 52.42 |
| CDY26787 | Canola | cytosol | 51.79 | 52.42 |
| CDY70131 | Canola | cytosol | 23.15 | 46.41 |
| CDX81933 | Canola | nucleus | 32.22 | 27.89 |
| CDY43523 | Canola | nucleus | 31.03 | 27.37 |
| CDY29763 | Canola | endoplasmic reticulum | 21.72 | 27.0 |
| CDY21661 | Canola | nucleus | 32.46 | 26.88 |
| CDY06779 | Canola | nucleus | 30.79 | 26.6 |
| CDY48711 | Canola | nucleus | 31.74 | 26.44 |
| CDY03358 | Canola | nucleus | 31.74 | 26.39 |
| CDY35867 | Canola | cytosol | 17.18 | 25.35 |
| CDY70287 | Canola | nucleus | 10.74 | 24.59 |
| CDX82696 | Canola | nucleus | 24.34 | 23.18 |
| CDY48712 | Canola | plastid | 24.58 | 21.87 |
| CDY03357 | Canola | plastid | 24.58 | 21.78 |
| CDX99799 | Canola | cytosol | 16.23 | 21.45 |
| CDY35872 | Canola | cytosol, nucleus, plastid | 17.18 | 21.18 |
| CDY21659 | Canola | nucleus | 23.87 | 21.14 |
| CDY50786 | Canola | cytosol | 15.99 | 21.14 |
| CDX90175 | Canola | cytosol | 15.99 | 21.14 |
| CDX81935 | Canola | nucleus | 23.87 | 21.05 |
| CDY43325 | Canola | cytosol | 15.75 | 20.82 |
| CDX82701 | Canola | nucleus | 18.85 | 20.36 |
Protein Annotations
| MapMan:12.2.1.3 | MapMan:12.3.3.1.1.1 | Gene3D:2.130.10.10 | GO:A0A078ELA9 | EnsemblPlants:CDY02805 | ProteinID:CDY02805 |
| ProteinID:CDY02805.1 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00114982001 |
| InterPro:Histone-bd_RBBP4_N | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | PFAM:PF00400 | PFAM:PF12265 |
| PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR22850 | PANTHER:PTHR22850:SF82 |
| SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI0004EC2892 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS |
| InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg | : | : | : |
Description
BnaC02g10840D
Coordinates
chrLK031937:+:539230..541420
Molecular Weight (calculated)
47687.5 Da
IEP (calculated)
4.481
GRAVY (calculated)
-0.516
Length
419 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKDDEEMRE EIEERLISEE YRIWKKNTPF LYDLVIAHLL EWPSLTVEWL PDREEPSGKD YSVQKMILGT HTHVNESNYL MLAQVQLPLD DAEYDDERAE
101: FGGFGSATGK VQVIQKINHE GELNRARYMP QNPFMIATKT VNAEVYVFDY SKHPSKPALD GACNPDLRLR GHSSEGYGLS WSTLKQGHLL SGSDDAQICL
201: WDINATPKNK TLDAHQIFKA HEGAVEDVAW HLRHEYLFGS VGDDQYFFIW DLRSPSASRP VQSVAAHSME VNCLAFNPLN EWIVATGSTD KTVKLFDLRR
301: LSNALHSFDG HKEEVFQVGW SPKNETILAS CCFGRRLMVW DVNRIDEEQT AEAAEDGPPE LLFTHGGYAA KISDFSWNPC DDWVISSVSE DNILQIWQMT
401: ETIYHDEDDA PGEEPLRGS
101: FGGFGSATGK VQVIQKINHE GELNRARYMP QNPFMIATKT VNAEVYVFDY SKHPSKPALD GACNPDLRLR GHSSEGYGLS WSTLKQGHLL SGSDDAQICL
201: WDINATPKNK TLDAHQIFKA HEGAVEDVAW HLRHEYLFGS VGDDQYFFIW DLRSPSASRP VQSVAAHSME VNCLAFNPLN EWIVATGSTD KTVKLFDLRR
301: LSNALHSFDG HKEEVFQVGW SPKNETILAS CCFGRRLMVW DVNRIDEEQT AEAAEDGPPE LLFTHGGYAA KISDFSWNPC DDWVISSVSE DNILQIWQMT
401: ETIYHDEDDA PGEEPLRGS
001: MGKDEEEMRG EIEERLINEE YKIWKKNTPF LYDLVITHAL EWPSLTVEWL PDREEPSGKD YSVQKMILGT HTSESEPNYL MLAQVQLPLD DTESEARQYD
101: DDRSEFGGFG CATGKVQIIQ QINHDGEVNR ARYMPQNPFI IATKTVNAEV YVFDYSKHPS KPPLDGACNP DLKLRGHSSE GYGLSWSKFK QGHLLSGSDD
201: AQICLWDINA TPKNKSLDAQ QIFKAHEGVV EDVAWHLRHE YLFGSVGDDQ YLLIWDLRSP SASKPVQSVV AHSMEVNCLA FNPFNEWVVA TGSTDKTVKL
301: FDLRKLSTAL HTFDSHKEEV FQVGWNPKNE TILASCCLGR RLMVWDLSRI DEEQTVEDAE DGPPELLFIH GGHTSKISDF SWNPCEDWVI SSVAEDNILQ
401: IWQMAENIYH DEDDAPGEEP SKAS
101: DDRSEFGGFG CATGKVQIIQ QINHDGEVNR ARYMPQNPFI IATKTVNAEV YVFDYSKHPS KPPLDGACNP DLKLRGHSSE GYGLSWSKFK QGHLLSGSDD
201: AQICLWDINA TPKNKSLDAQ QIFKAHEGVV EDVAWHLRHE YLFGSVGDDQ YLLIWDLRSP SASKPVQSVV AHSMEVNCLA FNPFNEWVVA TGSTDKTVKL
301: FDLRKLSTAL HTFDSHKEEV FQVGWNPKNE TILASCCLGR RLMVWDLSRI DEEQTVEDAE DGPPELLFIH GGHTSKISDF SWNPCEDWVI SSVAEDNILQ
401: IWQMAENIYH DEDDAPGEEP SKAS
Arabidopsis Description
MSI1Histone-binding protein MSI1 [Source:UniProtKB/Swiss-Prot;Acc:O22467]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.