CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06163	Canola	plastid	96.41	95.98
AT1G05190.1	Thale cress	plastid	95.07	95.07
CDY49511	Canola	plastid	94.62	94.62
CDY46838	Canola	plastid	94.62	94.62
VIT_12s0059g02250.t01	Wine grape	plastid	81.17	80.09
KRH09014	Soybean	nucleus	80.72	79.65
KRH38479	Soybean	plastid	80.72	79.65
PGSC0003DMT400061282	Potato	extracellular	78.48	77.09
GSMUA_Achr5P16270_001	Banana	plastid	72.2	71.24
Os03t0751400-01	Rice	plastid	72.2	71.24
HORVU4Hr1G040950.1	Barley	plastid	71.3	70.35
TraesCS5A01G279700.1	Wheat	golgi	71.3	70.35
TraesCS4D01G164500.1	Wheat	golgi	71.3	70.35
TraesCS4B01G157100.1	Wheat	plastid	71.3	70.35
Os03t0356300-01	Rice	nucleus	70.85	69.91
TraesCS4A01G144500.1	Wheat	plastid	70.85	69.91
EER92258	Sorghum	plastid	69.51	68.58
Solyc12g100160.1.1	Tomato	plastid	78.48	68.09
Zm00001d029201_P001	Maize	plastid	68.61	67.7
CDY41816	Canola	endoplasmic reticulum	61.44	65.87
Zm00001d047462_P001	Maize	cytosol	67.71	50.67
CDY29232	Canola	cytosol, mitochondrion	20.63	45.1
CDY13038	Canola	cytosol, mitochondrion	20.63	45.1
CDY71465	Canola	cytosol, mitochondrion	20.63	45.1
CDY65154	Canola	cytosol, mitochondrion	20.63	45.1
CDY36480	Canola	cytosol, mitochondrion	20.18	44.12

Protein Annotations

MapMan:17.7.2.1.6	Gene3D:3.90.930.12	GO:A0A078JYL0	UniProt:A0A078JYL0	EnsemblPlants:CDY70611	ProteinID:CDY70611
ProteinID:CDY70611.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
GO:GO:0019843	GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00004827001	InterPro:IPR036789	HAMAP:MF_01365_B	PFAM:PF00347
PIRSF:PIRSF002162	PRINTS:PR00059	ScanProsite:PS00525	PANTHER:PTHR11655	PANTHER:PTHR11655:SF14	InterPro:Ribosomal_L6
InterPro:Ribosomal_L6_CS	InterPro:Ribosomal_L6_a/b-dom	InterPro:Ribosomal_L6_a/b-dom_sf	InterPro:Ribosomal_L6_bac-type	SUPFAM:SSF56053	TIGRFAMs:TIGR03654
UniParc:UPI0004EEF80F	SEG:seg	:	:	:	:

Description

BnaAnng34360DBnaAnng34360D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JYL0]

Coordinates

chrLK042680:+:1825..3122

Molecular Weight (calculated)

24683.1 Da

IEP (calculated)

10.599

GRAVY (calculated)

-0.387

Length

223 amino acids

Sequence
(BLAST)

001: MASSVVSSFQ PRSSFLGERN VFKVSTAPIA QVGFSSKTIE CKESRIGKQP IAVPSNVTIA LEGQDLKVKG PLGELALTYP REVELLKEDS GFLRVKKTVE
101: TRRANQMHGL FRTLTDNMVV GVSKGFEKKL ILVGVGYRAT VEGKELVLNL GFSHPVKMQI PESLKVKVEE NTRITVSGYD KSEIGQFAAT VRKWRPPEPY
201: KGKGVKYSDE IVRRKEGKAG KKK

Best Arabidopsis Sequence Match ( AT1G05190.1 )
(BLAST)

001: MASSLVSSFQ PRSAFLGDRN VFKVSSTPFA QVGYSSKTIE CKESRIGKQP IAVPSNVTIA LEGQDLKVKG PLGELALTYP REVELTKEES GFLRVKKTVE
101: TRRANQMHGL FRTLTDNMVV GVSKGFEKKL ILVGVGYRAT VDGKELVLNL GFSHPVKMQI PDSLKVKVEE NTRITVSGYD KSEIGQFAAT VRKWRPPEPY
201: KGKGVKYSDE IVRRKEGKAG KKK

Arabidopsis Description

RPL650S ribosomal protein L6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O23049]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.