Factsheet for Os03t0356300-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 9
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 19621931

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0751400-01	Rice	plastid	96.02	96.02
TraesCS4D01G164500.1	Wheat	golgi	93.81	93.81
HORVU4Hr1G040950.1	Barley	plastid	93.81	93.81
TraesCS4B01G157100.1	Wheat	plastid	93.36	93.36
TraesCS5A01G279700.1	Wheat	golgi	92.92	92.92
TraesCS4A01G144500.1	Wheat	plastid	92.48	92.48
EER92258	Sorghum	plastid	89.82	89.82
Zm00001d029201_P001	Maize	plastid	87.17	87.17
VIT_12s0059g02250.t01	Wine grape	plastid	73.89	73.89
PGSC0003DMT400061282	Potato	extracellular	72.57	72.25
KRH09014	Soybean	nucleus	72.12	72.12
KRH38479	Soybean	plastid	71.24	71.24
CDY70611	Canola	plastid	69.91	70.85
AT1G05190.1	Thale cress	plastid	69.47	70.4
Bra032481.1-P	Field mustard	plastid	69.47	70.09
CDY46838	Canola	plastid	69.03	69.96
GSMUA_Achr5P16270_001	Banana	plastid	69.91	69.91
CDY06163	Canola	plastid	69.03	69.64
Bra015397.1-P	Field mustard	plastid	68.58	69.51
CDY49511	Canola	plastid	68.58	69.51
Zm00001d047462_P001	Maize	cytosol	84.96	64.43
Solyc12g100160.1.1	Tomato	plastid	73.01	64.2
CDY41816	Canola	endoplasmic reticulum	49.12	53.37
Bra035618.1-P	Field mustard	endoplasmic reticulum, golgi	51.77	51.32
Os03t0725000-01	Rice	mitochondrion	17.7	38.84

Protein Annotations

MapMan:17.7.2.1.6	Gene3D:3.90.930.12	EntrezGene:4332868	ProteinID:ABF96017.1	EMBL:AK061469	ProteinID:BAF12053.1
ProteinID:BAS84237.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
GO:GO:0019843	InterPro:IPR036789	HAMAP:MF_01365_B	EnsemblPlantsGene:Os03g0356300	EnsemblPlants:Os03t0356300-01	PFAM:PF00347
PIRSF:PIRSF002162	PRINTS:PR00059	ScanProsite:PS00525	PANTHER:PTHR11655	PANTHER:PTHR11655:SF14	UniProt:Q10L93
InterPro:Ribosomal_L6	InterPro:Ribosomal_L6_CS	InterPro:Ribosomal_L6_a/b-dom	InterPro:Ribosomal_L6_a/b-dom_sf	InterPro:Ribosomal_L6_bac-type	SUPFAM:SSF56053
TIGRFAMs:TIGR03654	UniParc:UPI0000DB4640	RefSeq:XP_015628709.1	:	:	:

Description

Ribosomal protein L6 family protein. (Os03t0356300-01)

Coordinates

chr3:-:13627581..13630305

Molecular Weight (calculated)

24886.6 Da

IEP (calculated)

10.746

GRAVY (calculated)

-0.403

Length

226 amino acids

Sequence
(BLAST)

001: MASLSPSLHL PCNSRTGFAG KTQGIRLRVI PAGRVGFVRT TVECKESRIG KKPIEVPSNV TLTLEEQFIK AKGPLGELSL NYPGEVKVVK EESGKLRVSK
101: TVETKRANQM HGLFRTLTDN IIVGVSKGFD KKLQLVGVGY RAAVEGKDLV MNLGFSHPVR MAVPEGLKVK VEENTRIIVS GYDKSEIGQF AASIKKWRPP
201: EPYKGKGIRY ADEIVRRKEG KAGKKK

Best Arabidopsis Sequence Match ( AT1G05190.1 )
(BLAST)

001: MASSLVSSFQ PRSAFLGDRN VFKVSSTPFA QVGYSSKTIE CKESRIGKQP IAVPSNVTIA LEGQDLKVKG PLGELALTYP REVELTKEES GFLRVKKTVE
101: TRRANQMHGL FRTLTDNMVV GVSKGFEKKL ILVGVGYRAT VDGKELVLNL GFSHPVKMQI PDSLKVKVEE NTRITVSGYD KSEIGQFAAT VRKWRPPEPY
201: KGKGVKYSDE IVRRKEGKAG KKK

Arabidopsis Description

RPL650S ribosomal protein L6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O23049]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.