CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 9
cytosol 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH38479	Soybean	plastid	96.02	96.02
CDY70611	Canola	plastid	79.65	80.72
AT1G05190.1	Thale cress	plastid	79.2	80.27
Bra032481.1-P	Field mustard	plastid	78.32	79.02
CDY46838	Canola	plastid	77.88	78.92
CDY06163	Canola	plastid	77.88	78.57
CDY49511	Canola	plastid	77.43	78.48
VIT_12s0059g02250.t01	Wine grape	plastid	78.32	78.32
Bra015397.1-P	Field mustard	plastid	76.99	78.03
PGSC0003DMT400061282	Potato	extracellular	77.88	77.53
Os03t0356300-01	Rice	nucleus	72.12	72.12
Os03t0751400-01	Rice	plastid	70.8	70.8
GSMUA_Achr5P16270_001	Banana	plastid	69.91	69.91
EER92258	Sorghum	plastid	69.03	69.03
HORVU4Hr1G040950.1	Barley	plastid	69.03	69.03
TraesCS4B01G157100.1	Wheat	plastid	69.03	69.03
TraesCS4D01G164500.1	Wheat	golgi	69.03	69.03
TraesCS5A01G279700.1	Wheat	golgi	69.03	69.03
TraesCS4A01G144500.1	Wheat	plastid	68.58	68.58
Zm00001d029201_P001	Maize	plastid	68.14	68.14
Solyc12g100160.1.1	Tomato	plastid	77.43	68.09
CDY41816	Canola	endoplasmic reticulum	53.54	58.17
Bra035618.1-P	Field mustard	endoplasmic reticulum, golgi	53.54	53.07
Zm00001d047462_P001	Maize	cytosol	67.7	51.34
KRH55238	Soybean	cytosol, mitochondrion	19.91	44.12
KRH34653	Soybean	cytosol, extracellular	19.47	43.14
KRG92137	Soybean	cytosol, extracellular	19.47	43.14

Protein Annotations

EntrezGene:100801236	MapMan:17.7.2.1.6	Gene3D:3.90.930.12	EMBL:ACUP02010263	EnsemblPlantsGene:GLYMA_16G189100	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0019843	GO:GO:0030529
UniProt:I1MPT8	InterPro:IPR036789	EnsemblPlants:KRH09014	ProteinID:KRH09014	ProteinID:KRH09014.1	HAMAP:MF_01365_B
PFAM:PF00347	PIRSF:PIRSF002162	PRINTS:PR00059	ScanProsite:PS00525	PANTHER:PTHR11655	PANTHER:PTHR11655:SF14
InterPro:Ribosomal_L6	InterPro:Ribosomal_L6_CS	InterPro:Ribosomal_L6_a/b-dom	InterPro:Ribosomal_L6_a/b-dom_sf	InterPro:Ribosomal_L6_bac-type	SUPFAM:SSF56053
TIGRFAMs:TIGR03654	UniParc:UPI000233AD7D	:	:	:	:

Description

hypothetical protein

Coordinates

chr16:-:35170253..35173950

Molecular Weight (calculated)

24949.4 Da

IEP (calculated)

10.682

GRAVY (calculated)

-0.442

Length

226 amino acids

Sequence
(BLAST)

001: MASSVTSSFR ISNLKSVFVG ETNKLRVSSV PGAHVGFNRK TVECKESRIG KQPIPVPSNV TVKLEGQDIQ VKGPLGELAL TYPREVLVER EESGTLRVKK
101: AVETRRANQM HGLFRTLTDN LVIGVSKGFD KKLQLVGVGY RAMVEGNEVV LNLGFSHPVK MTIPDGLKVK VEENTRITVS GYDKSEVGQF AASIRKWRPP
201: EPYKGKGVKY ADEIVRRKEG KAGKKK

Best Arabidopsis Sequence Match ( AT1G05190.1 )
(BLAST)

001: MASSLVSSFQ PRSAFLGDRN VFKVSSTPFA QVGYSSKTIE CKESRIGKQP IAVPSNVTIA LEGQDLKVKG PLGELALTYP REVELTKEES GFLRVKKTVE
101: TRRANQMHGL FRTLTDNMVV GVSKGFEKKL ILVGVGYRAT VDGKELVLNL GFSHPVKMQI PDSLKVKVEE NTRITVSGYD KSEIGQFAAT VRKWRPPEPY
201: KGKGVKYSDE IVRRKEGKAG KKK

Arabidopsis Description

RPL650S ribosomal protein L6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O23049]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.