CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

plastid 1
mitochondrion 5
cytosol 2
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34653	Soybean	cytosol, extracellular	98.04	98.04
KRH55238	Soybean	cytosol, mitochondrion	97.06	97.06
CDY71465	Canola	cytosol, mitochondrion	91.18	91.18
AT2G18400.1	Thale cress	cytosol, mitochondrion	91.18	91.18
Bra024469.1-P	Field mustard	cytosol, mitochondrion	90.2	90.2
Bra039612.1-P	Field mustard	cytosol, mitochondrion	90.2	90.2
CDY13038	Canola	cytosol, mitochondrion	90.2	90.2
CDY29232	Canola	cytosol, mitochondrion	90.2	90.2
CDY65154	Canola	cytosol, mitochondrion	90.2	90.2
CDY36480	Canola	cytosol, mitochondrion	89.22	89.22
Solyc02g085280.1.1	Tomato	cytosol, extracellular	88.24	88.24
PGSC0003DMT400009003	Potato	cytosol, extracellular	88.24	88.24
VIT_04s0023g01810.t01	Wine grape	cytosol, extracellular	87.25	87.25
GSMUA_Achr2P08570_001	Banana	mitochondrion	83.33	83.33
GSMUA_Achr4P07340_001	Banana	cytosol, mitochondrion	56.86	81.69
EES01089	Sorghum	cytosol, mitochondrion	76.47	75.73
EES07474	Sorghum	cytosol, mitochondrion	75.49	74.76
Os03t0725000-01	Rice	mitochondrion	74.51	73.79
TraesCS6B01G331800.1	Wheat	mitochondrion	73.53	72.12
TraesCS6D01G282100.1	Wheat	mitochondrion	73.53	72.12
TraesCS6A01G302600.1	Wheat	mitochondrion	73.53	72.12
Zm00001d051422_P001	Maize	mitochondrion	72.55	71.15
TraesCS4D01G056500.1	Wheat	mitochondrion	72.55	71.15
TraesCS4B01G056100.1	Wheat	mitochondrion	72.55	71.15
HORVU4Hr1G009420.1	Barley	mitochondrion	72.55	71.15
TraesCS4A01G258300.1	Wheat	cytosol	71.57	70.19
TraesCS5A01G097400.1	Wheat	cytosol, mitochondrion	65.69	66.34
HORVU5Hr1G026360.7	Barley	cytosol, mitochondrion	65.69	65.05
HORVU6Hr1G075100.7	Barley	cytosol	73.53	52.45
KRH38479	Soybean	plastid	44.12	19.91
KRH09014	Soybean	nucleus	43.14	19.47

Protein Annotations

EntrezGene:100811303	MapMan:17.7.1.1.7	Gene3D:3.90.930.12	EMBL:ACUP02012732	EMBL:BT093054	UniProt:C6T6I8
EnsemblPlantsGene:GLYMA_20G193100	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
GO:GO:0019843	GO:GO:0030529	InterPro:IPR036789	ProteinID:KRG92136.1	EnsemblPlants:KRG92137	ProteinID:KRG92137
ProteinID:KRG92137.1	PFAM:PF00347	PRINTS:PR00059	ScanProsite:PS00525	PANTHER:PTHR11655	PANTHER:PTHR11655:SF17
InterPro:Ribosomal_L6	InterPro:Ribosomal_L6_CS	InterPro:Ribosomal_L6_a/b-dom	InterPro:Ribosomal_L6_a/b-dom_sf	InterPro:Ribosomal_L6_bac-type	SUPFAM:SSF56053
UniParc:UPI0001B161DF	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:-:43203810..43205583

Molecular Weight (calculated)

11526.4 Da

IEP (calculated)

10.442

GRAVY (calculated)

-0.151

Length

102 amino acids

Sequence
(BLAST)

001: MEAKFFRFLK IVGVGYKARA EAAGRLLYLK LGYSHDVELA VPPAVRVFCF KNNVICCTGI DKQRVHQFAA TVRTCKPPEV YKGKGLMYVD EVIKKKQGKK
101: SK

Best Arabidopsis Sequence Match ( AT2G18400.1 )
(BLAST)

001: MEAKFFRFLK IVGVGYKARA EEAGRFLYLK LGYSHEVELA VPPAVRVFCF KNNVVCCTGI DKQRVHQFAA TVRSCKPPEP YKGKGIMYTD EVVKKKQGKK
101: SK

Arabidopsis Description

Putative ribosomal protein L6 [Source:UniProtKB/TrEMBL;Acc:Q9ZPX2]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.