Factsheet for Zm00001d051422_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 2
mitochondrion 3
extracellular 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, extracellular, mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	extracellular

mitochondrion: 27297264
mitochondrion: 29575040

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 29575040 doi

WQ Wang, Y Wang, Q Zhang, IM Møller, SQ Song

Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07474	Sorghum	cytosol, mitochondrion	93.27	94.17
Os03t0725000-01	Rice	mitochondrion	85.58	86.41
VIT_04s0023g01810.t01	Wine grape	cytosol, extracellular	80.77	82.35
GSMUA_Achr2P08570_001	Banana	mitochondrion	78.85	80.39
Solyc02g085280.1.1	Tomato	cytosol, extracellular	77.88	79.41
PGSC0003DMT400009003	Potato	cytosol, extracellular	77.88	79.41
GSMUA_Achr4P07340_001	Banana	cytosol, mitochondrion	53.85	78.87
HORVU5Hr1G026360.7	Barley	cytosol, mitochondrion	77.88	78.64
TraesCS5A01G097400.1	Wheat	cytosol, mitochondrion	75.96	78.22
Bra024469.1-P	Field mustard	cytosol, mitochondrion	74.04	75.49
KRH55238	Soybean	cytosol, mitochondrion	74.04	75.49
CDY65154	Canola	cytosol, mitochondrion	74.04	75.49
CDY29232	Canola	cytosol, mitochondrion	74.04	75.49
CDY13038	Canola	cytosol, mitochondrion	74.04	75.49
Bra039612.1-P	Field mustard	cytosol, mitochondrion	74.04	75.49
CDY71465	Canola	cytosol, mitochondrion	73.08	74.51
KRH34653	Soybean	cytosol, extracellular	73.08	74.51
CDY36480	Canola	cytosol, mitochondrion	73.08	74.51
KRG92137	Soybean	cytosol, extracellular	71.15	72.55
AT2G18400.1	Thale cress	cytosol, mitochondrion	71.15	72.55
Zm00001d029201_P001	Maize	plastid	42.31	19.47
Zm00001d047462_P001	Maize	cytosol	42.31	14.77

Protein Annotations

EntrezGene:100304027	MapMan:17.7.1.1.7	Gene3D:3.90.930.12	ProteinID:AQK54206.1	UniProt:B6TNB0	EMBL:EU966475
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0019843
GO:GO:0030529	InterPro:IPR036789	PFAM:PF00347	PRINTS:PR00059	ScanProsite:PS00525	PANTHER:PTHR11655
PANTHER:PTHR11655:SF17	InterPro:Ribosomal_L6	InterPro:Ribosomal_L6_CS	InterPro:Ribosomal_L6_a/b-dom	InterPro:Ribosomal_L6_a/b-dom_sf	InterPro:Ribosomal_L6_bac-type
SUPFAM:SSF56053	UniParc:UPI000182E1D0	EnsemblPlantsGene:Zm00001d051422	EnsemblPlants:Zm00001d051422_P001	EnsemblPlants:Zm00001d051422_T001	:

Description

60S ribosomal protein L6%3B Mitochondrial 60S ribosomal protein L6

Coordinates

chr4:+:158027318..158027632

Molecular Weight (calculated)

11791.7 Da

IEP (calculated)

10.771

GRAVY (calculated)

-0.224

Length

104 amino acids

Sequence
(BLAST)

001: MEAKFFRFLK LVGVGFKARS ESQGRELFLK LGFSHEVQFT APPAVRVFCF KPNIICCTGI DKDRVHQFAG AIRSSKAPEV YKGKGILYID EVIKLKPGKK
101: RKNK

Best Arabidopsis Sequence Match ( AT2G18400.1 )
(BLAST)

001: MEAKFFRFLK IVGVGYKARA EEAGRFLYLK LGYSHEVELA VPPAVRVFCF KNNVVCCTGI DKQRVHQFAA TVRSCKPPEP YKGKGIMYTD EVVKKKQGKK
101: SK

Arabidopsis Description

Putative ribosomal protein L6 [Source:UniProtKB/TrEMBL;Acc:Q9ZPX2]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.