Factsheet for Zm00001d029201_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	plastid

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92258	Sorghum	plastid	96.02	96.02
Os03t0356300-01	Rice	nucleus	87.17	87.17
Os03t0751400-01	Rice	plastid	85.84	85.84
HORVU4Hr1G040950.1	Barley	plastid	85.4	85.4
TraesCS4D01G164500.1	Wheat	golgi	84.96	84.96
TraesCS4B01G157100.1	Wheat	plastid	84.51	84.51
TraesCS5A01G279700.1	Wheat	golgi	84.07	84.07
TraesCS4A01G144500.1	Wheat	plastid	83.63	83.63
PGSC0003DMT400061282	Potato	extracellular	69.47	69.16
Zm00001d047462_P001	Maize	cytosol	91.15	69.13
VIT_12s0059g02250.t01	Wine grape	plastid	69.03	69.03
CDY70611	Canola	plastid	67.7	68.61
KRH38479	Soybean	plastid	68.58	68.58
CDY46838	Canola	plastid	67.26	68.16
KRH09014	Soybean	nucleus	68.14	68.14
Bra032481.1-P	Field mustard	plastid	67.26	67.86
Bra015397.1-P	Field mustard	plastid	66.81	67.71
CDY49511	Canola	plastid	66.81	67.71
AT1G05190.1	Thale cress	plastid	66.81	67.71
GSMUA_Achr5P16270_001	Banana	plastid	67.7	67.7
CDY06163	Canola	plastid	66.81	67.41
Solyc12g100160.1.1	Tomato	plastid	69.03	60.7
CDY41816	Canola	endoplasmic reticulum	47.79	51.92
Bra035618.1-P	Field mustard	endoplasmic reticulum, golgi	50.0	49.56
Zm00001d051422_P001	Maize	mitochondrion	19.47	42.31

Protein Annotations

EntrezGene:100285964	MapMan:17.7.2.1.6	Gene3D:3.90.930.12	UniProt:B6UCF0	EMBL:EU974915	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0019843	GO:GO:0030529
InterPro:IPR036789	HAMAP:MF_01365_B	ProteinID:ONL98169.1	PFAM:PF00347	PIRSF:PIRSF002162	PRINTS:PR00059
ScanProsite:PS00525	PANTHER:PTHR11655	PANTHER:PTHR11655:SF14	InterPro:Ribosomal_L6	InterPro:Ribosomal_L6_CS	InterPro:Ribosomal_L6_a/b-dom
InterPro:Ribosomal_L6_a/b-dom_sf	InterPro:Ribosomal_L6_bac-type	SUPFAM:SSF56053	TIGRFAMs:TIGR03654	UniParc:UPI000182F170	EnsemblPlantsGene:Zm00001d029201
EnsemblPlants:Zm00001d029201_P001	EnsemblPlants:Zm00001d029201_T001	:	:	:	:

Description

50S ribosomal protein L6

Coordinates

chr1:-:62065593..62069082

Molecular Weight (calculated)

24903.4 Da

IEP (calculated)

10.674

GRAVY (calculated)

-0.408

Length

226 amino acids

Sequence
(BLAST)

001: MASISPSLHH PCNSRTGFLG KTHGTRPRLF SAGRVGFVRT LVECKESRIG KQPIEVPPNV TLTLEEQFVK AKGPLGELSL SFPGDVKIVK EESGNLRVYK
101: TAETKRANQM HGLFRTLTDN IIVGVSKGFD KKLQLVGVGY RAAVEGNDLV MNLGFSHPVR MAIPEGLAVK VEENTRITVS GYDKSAIGQF AATIKKWRPP
201: EPYKGKGIRY MDEVVRRKEG KAGKKK

Best Arabidopsis Sequence Match ( AT1G05190.1 )
(BLAST)

001: MASSLVSSFQ PRSAFLGDRN VFKVSSTPFA QVGYSSKTIE CKESRIGKQP IAVPSNVTIA LEGQDLKVKG PLGELALTYP REVELTKEES GFLRVKKTVE
101: TRRANQMHGL FRTLTDNMVV GVSKGFEKKL ILVGVGYRAT VDGKELVLNL GFSHPVKMQI PDSLKVKVEE NTRITVSGYD KSEIGQFAAT VRKWRPPEPY
201: KGKGVKYSDE IVRRKEGKAG KKK

Arabidopsis Description

RPL650S ribosomal protein L6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O23049]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.