CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029201_P001	Maize	plastid	96.02	96.02
Os03t0356300-01	Rice	nucleus	89.82	89.82
HORVU4Hr1G040950.1	Barley	plastid	88.05	88.05
TraesCS4D01G164500.1	Wheat	golgi	87.61	87.61
Os03t0751400-01	Rice	plastid	87.61	87.61
TraesCS4B01G157100.1	Wheat	plastid	87.17	87.17
TraesCS5A01G279700.1	Wheat	golgi	86.73	86.73
TraesCS4A01G144500.1	Wheat	plastid	86.28	86.28
Zm00001d047462_P001	Maize	cytosol	92.48	70.13
PGSC0003DMT400061282	Potato	extracellular	70.35	70.04
VIT_12s0059g02250.t01	Wine grape	plastid	69.91	69.91
CDY70611	Canola	plastid	68.58	69.51
KRH38479	Soybean	plastid	69.47	69.47
AT1G05190.1	Thale cress	plastid	68.14	69.06
KRH09014	Soybean	nucleus	69.03	69.03
Bra032481.1-P	Field mustard	plastid	68.14	68.75
CDY46838	Canola	plastid	67.7	68.61
CDY06163	Canola	plastid	67.7	68.3
CDY49511	Canola	plastid	67.26	68.16
Bra015397.1-P	Field mustard	plastid	67.26	68.16
GSMUA_Achr5P16270_001	Banana	plastid	68.14	68.14
Solyc12g100160.1.1	Tomato	plastid	69.91	61.48
CDY41816	Canola	endoplasmic reticulum	47.35	51.44
Bra035618.1-P	Field mustard	endoplasmic reticulum, golgi	50.0	49.56
EES07474	Sorghum	cytosol, mitochondrion	19.47	42.72
EES01089	Sorghum	cytosol, mitochondrion	19.03	41.75

Protein Annotations

MapMan:17.7.2.1.6	Gene3D:3.90.930.12	EntrezGene:8080817	UniProt:C5WZQ4	EnsemblPlants:EER92258	ProteinID:EER92258
ProteinID:EER92258.1	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009719	GO:GO:0009735	GO:GO:0009790
GO:GO:0009791	GO:GO:0009793	GO:GO:0009941	GO:GO:0009987	GO:GO:0016020	GO:GO:0019538
GO:GO:0019843	GO:GO:0030529	InterPro:IPR036789	HAMAP:MF_01365_B	PFAM:PF00347	PIRSF:PIRSF002162
PRINTS:PR00059	ScanProsite:PS00525	PANTHER:PTHR11655	PANTHER:PTHR11655:SF14	InterPro:Ribosomal_L6	InterPro:Ribosomal_L6_CS
InterPro:Ribosomal_L6_a/b-dom	InterPro:Ribosomal_L6_a/b-dom_sf	InterPro:Ribosomal_L6_bac-type	EnsemblPlantsGene:SORBI_3001G368500	SUPFAM:SSF56053	unigene:Sbi.3728
TIGRFAMs:TIGR03654	UniParc:UPI0001A820ED	RefSeq:XP_002465260.1	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:65726881..65729993

Molecular Weight (calculated)

24846.5 Da

IEP (calculated)

10.674

GRAVY (calculated)

-0.325

Length

226 amino acids

Sequence
(BLAST)

001: MASLSPSLHL PCNSRTGFLG KTHGIRPRVL PAGRVGFVRT VVECKESRIG KQPIEVPSNV TLTLEEQFVK AKGPLGELSL SFPGDVKIVK EESGMLRVYK
101: TAETKRANQM HGLFRTLTDN IIVGVSKGFD KKLQLVGVGY RAAVEGNDLV MNLGFSHPVR MAIPEGLAVK VEENTRITVS GYDKSAIGQF AATIKKWRPP
201: EPYKGKGIRY MDEVVRRKEG KAGKKK

Best Arabidopsis Sequence Match ( AT1G05190.1 )
(BLAST)

001: MASSLVSSFQ PRSAFLGDRN VFKVSSTPFA QVGYSSKTIE CKESRIGKQP IAVPSNVTIA LEGQDLKVKG PLGELALTYP REVELTKEES GFLRVKKTVE
101: TRRANQMHGL FRTLTDNMVV GVSKGFEKKL ILVGVGYRAT VDGKELVLNL GFSHPVKMQI PDSLKVKVEE NTRITVSGYD KSEIGQFAAT VRKWRPPEPY
201: KGKGVKYSDE IVRRKEGKAG KKK

Arabidopsis Description

RPL650S ribosomal protein L6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O23049]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.