CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 3
extracellular 4
endoplasmic reticulum 6
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035618.1-P	Field mustard	endoplasmic reticulum, golgi	76.44	69.74
CDY70611	Canola	plastid	65.87	61.44
CDY49511	Canola	plastid	65.87	61.44
CDY06163	Canola	plastid	65.38	60.71
CDY46838	Canola	plastid	64.9	60.54
KRH09014	Soybean	nucleus	58.17	53.54
VIT_12s0059g02250.t01	Wine grape	plastid	58.17	53.54
PGSC0003DMT400061282	Potato	extracellular	58.17	53.3
KRH38479	Soybean	plastid	57.69	53.1
GSMUA_Achr5P16270_001	Banana	plastid	56.73	52.21
TraesCS5A01G279700.1	Wheat	golgi	53.85	49.56
TraesCS4D01G164500.1	Wheat	golgi	53.85	49.56
TraesCS4B01G157100.1	Wheat	plastid	53.85	49.56
HORVU4Hr1G040950.1	Barley	plastid	53.37	49.12
TraesCS4A01G144500.1	Wheat	plastid	53.37	49.12
Os03t0356300-01	Rice	nucleus	53.37	49.12
Os03t0751400-01	Rice	plastid	53.37	49.12
Zm00001d029201_P001	Maize	plastid	51.92	47.79
EER92258	Sorghum	plastid	51.44	47.35
Solyc12g100160.1.1	Tomato	plastid	57.69	46.69
CDY29232	Canola	cytosol, mitochondrion	19.71	40.2
CDY71465	Canola	cytosol, mitochondrion	19.71	40.2
CDY65154	Canola	cytosol, mitochondrion	19.71	40.2
CDY13038	Canola	cytosol, mitochondrion	19.71	40.2
CDY36480	Canola	cytosol, mitochondrion	19.23	39.22
Zm00001d047462_P001	Maize	cytosol	51.44	35.91

Protein Annotations

MapMan:17.7.2.1.6	Gene3D:3.90.930.12	GO:A0A078HVQ2	UniProt:A0A078HVQ2	EnsemblPlants:CDY41816	ProteinID:CDY41816
ProteinID:CDY41816.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
GO:GO:0019843	GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00073727001	InterPro:IPR036789	PFAM:PF00347	PIRSF:PIRSF002162
PRINTS:PR00059	PANTHER:PTHR11655	PANTHER:PTHR11655:SF14	InterPro:Ribosomal_L6	InterPro:Ribosomal_L6_a/b-dom	InterPro:Ribosomal_L6_a/b-dom_sf
InterPro:Ribosomal_L6_bac-type	SUPFAM:SSF56053	TIGRFAMs:TIGR03654	TMHMM:TMhelix	UniParc:UPI0004EEFBFA	SEG:seg

Description

BnaC02g12270DBnaC02g12270D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HVQ2]

Coordinates

chrLK032507:-:216392..217651

Molecular Weight (calculated)

23746.4 Da

IEP (calculated)

10.406

GRAVY (calculated)

-0.211

Length

208 amino acids

Sequence
(BLAST)

001: MASSFLSCFL PRTFVVLWPL CFGLVFRVRV LRRQKKSTQC LNHPICSSQD LKVKGPLGEL ALTYPPEVEL TEEDSGFLRV RKTVETRRAK EMHGLFRTLT
101: DNMVVGVSKG FEKTLELKGV GYRAMVQGKE LVLNLGFSHP VKIEIPDSLK VKVDKKIIIF VSGYDKCEIG QFAATVRKWR PAEPYKRIGV CYSDEIVHRK
201: KGKDRKLK

Best Arabidopsis Sequence Match ( AT1G05190.1 )
(BLAST)

001: MASSLVSSFQ PRSAFLGDRN VFKVSSTPFA QVGYSSKTIE CKESRIGKQP IAVPSNVTIA LEGQDLKVKG PLGELALTYP REVELTKEES GFLRVKKTVE
101: TRRANQMHGL FRTLTDNMVV GVSKGFEKKL ILVGVGYRAT VDGKELVLNL GFSHPVKMQI PDSLKVKVEE NTRITVSGYD KSEIGQFAAT VRKWRPPEPY
201: KGKGVKYSDE IVRRKEGKAG KKK

Arabidopsis Description

RPL650S ribosomal protein L6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O23049]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.