CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY65154	Canola	cytosol, mitochondrion	99.02	99.02
CDY13038	Canola	cytosol, mitochondrion	99.02	99.02
CDY29232	Canola	cytosol, mitochondrion	99.02	99.02
Bra039612.1-P	Field mustard	cytosol, mitochondrion	98.04	98.04
CDY36480	Canola	cytosol, mitochondrion	98.04	98.04
AT2G18400.1	Thale cress	cytosol, mitochondrion	96.08	96.08
KRH34653	Soybean	cytosol, extracellular	93.14	93.14
KRH55238	Soybean	cytosol, mitochondrion	92.16	92.16
KRG92137	Soybean	cytosol, extracellular	91.18	91.18
Solyc02g085280.1.1	Tomato	cytosol, extracellular	89.22	89.22
PGSC0003DMT400009003	Potato	cytosol, extracellular	89.22	89.22
VIT_04s0023g01810.t01	Wine grape	cytosol, extracellular	87.25	87.25
GSMUA_Achr4P07340_001	Banana	cytosol, mitochondrion	58.82	84.51
GSMUA_Achr2P08570_001	Banana	mitochondrion	84.31	84.31
EES01089	Sorghum	cytosol, mitochondrion	78.43	77.67
EES07474	Sorghum	cytosol, mitochondrion	77.45	76.7
Os03t0725000-01	Rice	mitochondrion	74.51	73.79
Zm00001d051422_P001	Maize	mitochondrion	74.51	73.08
TraesCS4B01G056100.1	Wheat	mitochondrion	73.53	72.12
TraesCS4D01G056500.1	Wheat	mitochondrion	73.53	72.12
TraesCS6A01G302600.1	Wheat	mitochondrion	73.53	72.12
TraesCS6B01G331800.1	Wheat	mitochondrion	73.53	72.12
TraesCS6D01G282100.1	Wheat	mitochondrion	73.53	72.12
HORVU4Hr1G009420.1	Barley	mitochondrion	72.55	71.15
TraesCS4A01G258300.1	Wheat	cytosol	72.55	71.15
TraesCS5A01G097400.1	Wheat	cytosol, mitochondrion	68.63	69.31
HORVU5Hr1G026360.7	Barley	cytosol, mitochondrion	69.61	68.93
HORVU6Hr1G075100.7	Barley	cytosol	73.53	52.45
CDY70611	Canola	plastid	45.1	20.63
CDY49511	Canola	plastid	45.1	20.63
CDY46838	Canola	plastid	45.1	20.63
CDY06163	Canola	plastid	45.1	20.54
CDY41816	Canola	endoplasmic reticulum	40.2	19.71

Protein Annotations

MapMan:17.7.1.1.7	Gene3D:3.90.930.12	GO:A0A078JYH7	UniProt:A0A078JYH7	EnsemblPlants:CDY71465	ProteinID:CDY71465
ProteinID:CDY71465.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
GO:GO:0019843	GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00015078001	InterPro:IPR036789	PFAM:PF00347	PRINTS:PR00059
ScanProsite:PS00525	PANTHER:PTHR11655	PANTHER:PTHR11655:SF17	InterPro:Ribosomal_L6	InterPro:Ribosomal_L6_CS	InterPro:Ribosomal_L6_a/b-dom
InterPro:Ribosomal_L6_a/b-dom_sf	InterPro:Ribosomal_L6_bac-type	SUPFAM:SSF56053	UniParc:UPI0004EBBE93	SEG:seg	:

Description

BnaCnng73010DBnaCnng73010D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JYH7]

Coordinates

chrLK045968:-:50..542

Molecular Weight (calculated)

11548.3 Da

IEP (calculated)

10.231

GRAVY (calculated)

-0.137

Length

102 amino acids

Sequence
(BLAST)

001: MEAKFFRFLK IVGVGYKARA EEAGRFLYLK LGYSHEVELA VPPAVRVFCF KNNVVCCTGI DKDRVHQFAA TVRSCKPPEV YKGKGIMYVD EVVKKKVGKK
101: SK

Best Arabidopsis Sequence Match ( AT2G18400.1 )
(BLAST)

001: MEAKFFRFLK IVGVGYKARA EEAGRFLYLK LGYSHEVELA VPPAVRVFCF KNNVVCCTGI DKQRVHQFAA TVRSCKPPEP YKGKGIMYTD EVVKKKQGKK
101: SK

Arabidopsis Description

Putative ribosomal protein L6 [Source:UniProtKB/TrEMBL;Acc:Q9ZPX2]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.