Factsheet for GSMUA_Achr2P08570_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P07340_001	Banana	cytosol, mitochondrion	67.65	97.18
VIT_04s0023g01810.t01	Wine grape	cytosol, extracellular	89.22	89.22
Solyc02g085280.1.1	Tomato	cytosol, extracellular	88.24	88.24
PGSC0003DMT400009003	Potato	cytosol, extracellular	88.24	88.24
Bra024469.1-P	Field mustard	cytosol, mitochondrion	85.29	85.29
Bra039612.1-P	Field mustard	cytosol, mitochondrion	85.29	85.29
CDY13038	Canola	cytosol, mitochondrion	85.29	85.29
CDY29232	Canola	cytosol, mitochondrion	85.29	85.29
CDY65154	Canola	cytosol, mitochondrion	85.29	85.29
KRH55238	Soybean	cytosol, mitochondrion	85.29	85.29
KRH34653	Soybean	cytosol, extracellular	85.29	85.29
CDY36480	Canola	cytosol, mitochondrion	84.31	84.31
CDY71465	Canola	cytosol, mitochondrion	84.31	84.31
AT2G18400.1	Thale cress	cytosol, mitochondrion	84.31	84.31
EES01089	Sorghum	cytosol, mitochondrion	84.31	83.5
KRG92137	Soybean	cytosol, extracellular	83.33	83.33
Os03t0725000-01	Rice	mitochondrion	83.33	82.52
EES07474	Sorghum	cytosol, mitochondrion	83.33	82.52
TraesCS6A01G302600.1	Wheat	mitochondrion	82.35	80.77
TraesCS6B01G331800.1	Wheat	mitochondrion	82.35	80.77
TraesCS6D01G282100.1	Wheat	mitochondrion	82.35	80.77
HORVU4Hr1G009420.1	Barley	mitochondrion	81.37	79.81
TraesCS4B01G056100.1	Wheat	mitochondrion	81.37	79.81
TraesCS4D01G056500.1	Wheat	mitochondrion	81.37	79.81
TraesCS4A01G258300.1	Wheat	cytosol	80.39	78.85
Zm00001d051422_P001	Maize	mitochondrion	80.39	78.85
TraesCS5A01G097400.1	Wheat	cytosol, mitochondrion	75.49	76.24
HORVU5Hr1G026360.7	Barley	cytosol, mitochondrion	75.49	74.76
HORVU6Hr1G075100.7	Barley	cytosol	82.35	58.74
GSMUA_Achr5P16270_001	Banana	plastid	44.12	19.91

Protein Annotations

MapMan:17.7.1.1.7	Gene3D:3.90.930.12	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0019843	GO:GO:0030529	EnsemblPlantsGene:GSMUA_Achr2G08570_001	EnsemblPlants:GSMUA_Achr2P08570_001	EnsemblPlants:GSMUA_Achr2T08570_001
InterPro:IPR036789	UniProt:M0S698	PFAM:PF00347	PRINTS:PR00059	ScanProsite:PS00525	PANTHER:PTHR11655
PANTHER:PTHR11655:SF17	InterPro:Ribosomal_L6	InterPro:Ribosomal_L6_CS	InterPro:Ribosomal_L6_a/b-dom	InterPro:Ribosomal_L6_a/b-dom_sf	InterPro:Ribosomal_L6_bac-type
SUPFAM:SSF56053	UniParc:UPI000295C62C	SEG:seg	:	:	:

Description

60S ribosomal protein L6, mitochondrial [Source:GMGC_GENE;Acc:GSMUA_Achr2G08570_001]

Coordinates

chr2:+:12526319..12526801

Molecular Weight (calculated)

11615.4 Da

IEP (calculated)

10.403

GRAVY (calculated)

-0.232

Length

102 amino acids

Sequence
(BLAST)

001: MEARFFRFLK IVGVGFKART EAEGRQLFLK LGYSHEVEFS VPPAVRVFCF KPNVICCTGI DKERVHQFAG AVRSCKPPEV YKGKGIMYID EVVKKKQGKK
101: SK

Best Arabidopsis Sequence Match ( AT2G18400.1 )
(BLAST)

001: MEAKFFRFLK IVGVGYKARA EEAGRFLYLK LGYSHEVELA VPPAVRVFCF KNNVVCCTGI DKQRVHQFAA TVRSCKPPEP YKGKGIMYTD EVVKKKQGKK
101: SK

Arabidopsis Description

Putative ribosomal protein L6 [Source:UniProtKB/TrEMBL;Acc:Q9ZPX2]
SUBAcon: [cytosol,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.