Factsheet for VIT_04s0023g01810.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

plastid 1
mitochondrion 4
cytosol 2
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g085280.1.1	Tomato	cytosol, extracellular	96.08	96.08
PGSC0003DMT400009003	Potato	cytosol, extracellular	96.08	96.08
GSMUA_Achr4P07340_001	Banana	cytosol, mitochondrion	63.73	91.55
KRH55238	Soybean	cytosol, mitochondrion	90.2	90.2
KRH34653	Soybean	cytosol, extracellular	89.22	89.22
GSMUA_Achr2P08570_001	Banana	mitochondrion	89.22	89.22
Bra024469.1-P	Field mustard	cytosol, mitochondrion	88.24	88.24
CDY13038	Canola	cytosol, mitochondrion	88.24	88.24
CDY29232	Canola	cytosol, mitochondrion	88.24	88.24
CDY65154	Canola	cytosol, mitochondrion	88.24	88.24
AT2G18400.1	Thale cress	cytosol, mitochondrion	88.24	88.24
KRG92137	Soybean	cytosol, extracellular	87.25	87.25
CDY71465	Canola	cytosol, mitochondrion	87.25	87.25
CDY36480	Canola	cytosol, mitochondrion	87.25	87.25
Bra039612.1-P	Field mustard	cytosol, mitochondrion	87.25	87.25
EES01089	Sorghum	cytosol, mitochondrion	86.27	85.44
EES07474	Sorghum	cytosol, mitochondrion	85.29	84.47
Os03t0725000-01	Rice	mitochondrion	82.35	81.55
Zm00001d051422_P001	Maize	mitochondrion	82.35	80.77
TraesCS6D01G282100.1	Wheat	mitochondrion	82.35	80.77
TraesCS6B01G331800.1	Wheat	mitochondrion	82.35	80.77
TraesCS6A01G302600.1	Wheat	mitochondrion	82.35	80.77
HORVU4Hr1G009420.1	Barley	mitochondrion	81.37	79.81
TraesCS4B01G056100.1	Wheat	mitochondrion	81.37	79.81
TraesCS4D01G056500.1	Wheat	mitochondrion	81.37	79.81
TraesCS4A01G258300.1	Wheat	cytosol	80.39	78.85
TraesCS5A01G097400.1	Wheat	cytosol, mitochondrion	76.47	77.23
HORVU5Hr1G026360.7	Barley	cytosol, mitochondrion	76.47	75.73
HORVU6Hr1G075100.7	Barley	cytosol	82.35	58.74
VIT_12s0059g02250.t01	Wine grape	plastid	41.18	18.58

Protein Annotations

EntrezGene:100247870	wikigene:100247870	MapMan:17.7.1.1.7	Gene3D:3.90.930.12	EMBL:AM479791	ProteinID:CAN72978
ProteinID:CAN72978.1	ProteinID:CBI17515	ProteinID:CBI17515.3	UniProt:D7SPD6	EMBL:FN594959	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0019843	GO:GO:0030529
InterPro:IPR036789	EntrezGene:LOC100247870	wikigene:LOC100247870	PFAM:PF00347	PRINTS:PR00059	ScanProsite:PS00525
PANTHER:PTHR11655	PANTHER:PTHR11655:SF17	InterPro:Ribosomal_L6	InterPro:Ribosomal_L6_CS	InterPro:Ribosomal_L6_a/b-dom	InterPro:Ribosomal_L6_a/b-dom_sf
InterPro:Ribosomal_L6_bac-type	SUPFAM:SSF56053	TIGR:TC62124	UniParc:UPI00015CAEBE	ArrayExpress:VIT_04s0023g01810	EnsemblPlantsGene:VIT_04s0023g01810
EnsemblPlants:VIT_04s0023g01810.t01	unigene:Vvi.3326	RefSeq:XP_002267044	RefSeq:XP_002267044.1	RefSeq:XP_010649147.1	:

Description

No Description!

Coordinates

chr4:+:18395074..18396148

Molecular Weight (calculated)

11565.5 Da

IEP (calculated)

10.483

GRAVY (calculated)

-0.121

Length

102 amino acids

Sequence
(BLAST)

001: MEAKFFRFLK IVGVGFKARA ESEGRLLFLK LGYSHEVELT VPPAVRVFCF KPNIVCCTGI DKQRVHQFAA AVRSCKPPEV YKGKGIMYID EVIKKKQGKK
101: SK

Best Arabidopsis Sequence Match ( AT2G18400.1 )
(BLAST)

001: MEAKFFRFLK IVGVGYKARA EEAGRFLYLK LGYSHEVELA VPPAVRVFCF KNNVVCCTGI DKQRVHQFAA TVRSCKPPEP YKGKGIMYTD EVVKKKQGKK
101: SK

Arabidopsis Description

Putative ribosomal protein L6 [Source:UniProtKB/TrEMBL;Acc:Q9ZPX2]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.