Factsheet for Bra024469.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
mitochondrion 5
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13038	Canola	cytosol, mitochondrion	100.0	100.0
CDY29232	Canola	cytosol, mitochondrion	100.0	100.0
CDY65154	Canola	cytosol, mitochondrion	100.0	100.0
Bra039612.1-P	Field mustard	cytosol, mitochondrion	99.02	99.02
CDY36480	Canola	cytosol, mitochondrion	99.02	99.02
AT2G18400.1	Thale cress	cytosol, mitochondrion	96.08	96.08
KRH34653	Soybean	cytosol, extracellular	92.16	92.16
KRH55238	Soybean	cytosol, mitochondrion	91.18	91.18
Solyc02g085280.1.1	Tomato	cytosol, extracellular	90.2	90.2
PGSC0003DMT400009003	Potato	cytosol, extracellular	90.2	90.2
KRG92137	Soybean	cytosol, extracellular	90.2	90.2
VIT_04s0023g01810.t01	Wine grape	cytosol, extracellular	88.24	88.24
GSMUA_Achr4P07340_001	Banana	cytosol, mitochondrion	59.8	85.92
GSMUA_Achr2P08570_001	Banana	mitochondrion	85.29	85.29
EES01089	Sorghum	cytosol, mitochondrion	79.41	78.64
EES07474	Sorghum	cytosol, mitochondrion	78.43	77.67
Os03t0725000-01	Rice	mitochondrion	75.49	74.76
Zm00001d051422_P001	Maize	mitochondrion	75.49	74.04
TraesCS4B01G056100.1	Wheat	mitochondrion	74.51	73.08
TraesCS4D01G056500.1	Wheat	mitochondrion	74.51	73.08
TraesCS6B01G331800.1	Wheat	mitochondrion	74.51	73.08
TraesCS6A01G302600.1	Wheat	mitochondrion	74.51	73.08
TraesCS6D01G282100.1	Wheat	mitochondrion	74.51	73.08
TraesCS4A01G258300.1	Wheat	cytosol	73.53	72.12
HORVU4Hr1G009420.1	Barley	mitochondrion	73.53	72.12
TraesCS5A01G097400.1	Wheat	cytosol, mitochondrion	69.61	70.3
HORVU5Hr1G026360.7	Barley	cytosol, mitochondrion	70.59	69.9
HORVU6Hr1G075100.7	Barley	cytosol	74.51	53.15
Bra015397.1-P	Field mustard	plastid	45.1	20.63
Bra032481.1-P	Field mustard	plastid	45.1	20.54
Bra035618.1-P	Field mustard	endoplasmic reticulum, golgi	40.2	17.98

Protein Annotations

MapMan:17.7.1.1.7	Gene3D:3.90.930.12	EnsemblPlantsGene:Bra024469	EnsemblPlants:Bra024469.1	EnsemblPlants:Bra024469.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0019843	GO:GO:0030529
InterPro:IPR036789	UniProt:M4E6R4	PFAM:PF00347	PRINTS:PR00059	ScanProsite:PS00525	PANTHER:PTHR11655
PANTHER:PTHR11655:SF17	InterPro:Ribosomal_L6	InterPro:Ribosomal_L6_CS	InterPro:Ribosomal_L6_a/b-dom	InterPro:Ribosomal_L6_a/b-dom_sf	InterPro:Ribosomal_L6_bac-type
SUPFAM:SSF56053	UniParc:UPI000253EF2F	SEG:seg	:	:	:

Description

AT2G18400 (E=8e-048) | ribosomal protein L6 family protein

Coordinates

chrA06:+:15978641..15978949

Molecular Weight (calculated)

11562.4 Da

IEP (calculated)

10.231

GRAVY (calculated)

-0.134

Length

102 amino acids

Sequence
(BLAST)

001: MEAKFFRFLK IVGVGYKARA EEAGRFLYLK LGYSHEVELA VPPAVRVFCF KNNVVCCTGI DKDRVHQFAA TVRSCKPPEV YKGKGIMYID EVVKKKVGKK
101: SK

Best Arabidopsis Sequence Match ( AT2G18400.1 )
(BLAST)

001: MEAKFFRFLK IVGVGYKARA EEAGRFLYLK LGYSHEVELA VPPAVRVFCF KNNVVCCTGI DKQRVHQFAA TVRSCKPPEP YKGKGIMYTD EVVKKKQGKK
101: SK

Arabidopsis Description

Putative ribosomal protein L6 [Source:UniProtKB/TrEMBL;Acc:Q9ZPX2]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.