CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
mitochondrion 5
cytosol 2
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01089	Sorghum	cytosol, mitochondrion	98.06	98.06
Zm00001d051422_P001	Maize	mitochondrion	94.17	93.27
Os03t0725000-01	Rice	mitochondrion	90.29	90.29
VIT_04s0023g01810.t01	Wine grape	cytosol, extracellular	84.47	85.29
GSMUA_Achr2P08570_001	Banana	mitochondrion	82.52	83.33
GSMUA_Achr4P07340_001	Banana	cytosol, mitochondrion	57.28	83.1
PGSC0003DMT400009003	Potato	cytosol, extracellular	81.55	82.35
Solyc02g085280.1.1	Tomato	cytosol, extracellular	81.55	82.35
TraesCS5A01G097400.1	Wheat	cytosol, mitochondrion	79.61	81.19
HORVU5Hr1G026360.7	Barley	cytosol, mitochondrion	80.58	80.58
CDY65154	Canola	cytosol, mitochondrion	77.67	78.43
CDY29232	Canola	cytosol, mitochondrion	77.67	78.43
KRH55238	Soybean	cytosol, mitochondrion	77.67	78.43
CDY13038	Canola	cytosol, mitochondrion	77.67	78.43
Bra039612.1-P	Field mustard	cytosol, mitochondrion	77.67	78.43
Bra024469.1-P	Field mustard	cytosol, mitochondrion	77.67	78.43
CDY71465	Canola	cytosol, mitochondrion	76.7	77.45
CDY36480	Canola	cytosol, mitochondrion	76.7	77.45
KRH34653	Soybean	cytosol, extracellular	76.7	77.45
AT2G18400.1	Thale cress	cytosol, mitochondrion	74.76	75.49
KRG92137	Soybean	cytosol, extracellular	74.76	75.49
EER92258	Sorghum	plastid	42.72	19.47

Protein Annotations

MapMan:17.7.1.1.7	Gene3D:3.90.930.12	EntrezGene:8076048	UniProt:C5Y1B5	EnsemblPlants:EES07474	ProteinID:EES07474
ProteinID:EES07474.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
GO:GO:0019843	GO:GO:0030529	InterPro:IPR036789	PFAM:PF00347	PRINTS:PR00059	ScanProsite:PS00525
PANTHER:PTHR11655	PANTHER:PTHR11655:SF17	InterPro:Ribosomal_L6	InterPro:Ribosomal_L6_CS	InterPro:Ribosomal_L6_a/b-dom	InterPro:Ribosomal_L6_a/b-dom_sf
InterPro:Ribosomal_L6_bac-type	EnsemblPlantsGene:SORBI_3004G286100	SUPFAM:SSF56053	UniParc:UPI0001A862A5	RefSeq:XP_002454498.1	:

Description

hypothetical protein

Coordinates

chr4:-:62848904..62853078

Molecular Weight (calculated)

11665.5 Da

IEP (calculated)

10.562

GRAVY (calculated)

-0.230

Length

103 amino acids

Sequence
(BLAST)

001: MEAKFFRFLK LVGVGFKARS ESQGRELFLK LGFSHEVQFT APPAVRVFCF KPNIICCTGI DKDRVHQFAG AVRSCKPPEV YKGKGILYID EVIKTKPGKK
101: QKK

Best Arabidopsis Sequence Match ( AT2G18400.1 )
(BLAST)

001: MEAKFFRFLK IVGVGYKARA EEAGRFLYLK LGYSHEVELA VPPAVRVFCF KNNVVCCTGI DKQRVHQFAA TVRSCKPPEP YKGKGIMYTD EVVKKKQGKK
101: SK

Arabidopsis Description

Putative ribosomal protein L6 [Source:UniProtKB/TrEMBL;Acc:Q9ZPX2]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.