Factsheet for HORVU5Hr1G026360.7

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

cytosol 2
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion, secretory
MultiLoc:	cytosol
Predotar:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G097400.1	Wheat	cytosol, mitochondrion	88.35	90.1
HORVU4Hr1G009420.1	Barley	mitochondrion	82.52	81.73
Os03t0725000-01	Rice	mitochondrion	81.55	81.55
EES01089	Sorghum	cytosol, mitochondrion	81.55	81.55
EES07474	Sorghum	cytosol, mitochondrion	80.58	80.58
Zm00001d051422_P001	Maize	mitochondrion	78.64	77.88
VIT_04s0023g01810.t01	Wine grape	cytosol, extracellular	75.73	76.47
GSMUA_Achr4P07340_001	Banana	cytosol, mitochondrion	52.43	76.06
GSMUA_Achr2P08570_001	Banana	mitochondrion	74.76	75.49
Solyc02g085280.1.1	Tomato	cytosol, extracellular	72.82	73.53
PGSC0003DMT400009003	Potato	cytosol, extracellular	72.82	73.53
CDY29232	Canola	cytosol, mitochondrion	69.9	70.59
CDY13038	Canola	cytosol, mitochondrion	69.9	70.59
CDY65154	Canola	cytosol, mitochondrion	69.9	70.59
Bra024469.1-P	Field mustard	cytosol, mitochondrion	69.9	70.59
CDY71465	Canola	cytosol, mitochondrion	68.93	69.61
CDY36480	Canola	cytosol, mitochondrion	68.93	69.61
Bra039612.1-P	Field mustard	cytosol, mitochondrion	68.93	69.61
KRH55238	Soybean	cytosol, mitochondrion	67.96	68.63
AT2G18400.1	Thale cress	cytosol, mitochondrion	66.99	67.65
KRH34653	Soybean	cytosol, extracellular	66.99	67.65
KRG92137	Soybean	cytosol, extracellular	65.05	65.69
HORVU6Hr1G075100.7	Barley	cytosol	82.52	59.44
HORVU4Hr1G040950.1	Barley	plastid	34.95	15.93

Protein Annotations

MapMan:17.7.1.1.7	Gene3D:3.90.930.12	UniProt:A0A287QQY6	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0019843	EnsemblPlantsGene:HORVU5Hr1G026360	EnsemblPlants:HORVU5Hr1G026360.7	InterPro:IPR036789
PFAM:PF00347	PRINTS:PR00059	ScanProsite:PS00525	PANTHER:PTHR11655	PANTHER:PTHR11655:SF17	InterPro:Ribosomal_L6
InterPro:Ribosomal_L6_CS	InterPro:Ribosomal_L6_a/b-dom	InterPro:Ribosomal_L6_a/b-dom_sf	InterPro:Ribosomal_L6_bac-type	SUPFAM:SSF56053	UniParc:UPI000B46C7F2

Description

No Description!

Coordinates

chrchr5H:-:148788092..148788597

Molecular Weight (calculated)

11673.4 Da

IEP (calculated)

9.638

GRAVY (calculated)

-0.129

Length

103 amino acids

Sequence
(BLAST)

001: MESKFFRFLK LVGVGFKART ECEGRELFLK LGYSHEVQFT APPAVRVFCF KPNIVCCTGL DKDRVHHFAG AGRNCKPPEV YKGKGILYIN EVMKRNSGAE
101: LLM

Best Arabidopsis Sequence Match ( AT2G18400.1 )
(BLAST)

001: MEAKFFRFLK IVGVGYKARA EEAGRFLYLK LGYSHEVELA VPPAVRVFCF KNNVVCCTGI DKQRVHQFAA TVRSCKPPEP YKGKGIMYTD EVVKKKQGKK
101: SK

Arabidopsis Description

Putative ribosomal protein L6 [Source:UniProtKB/TrEMBL;Acc:Q9ZPX2]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.