Factsheet for PGSC0003DMT400009003

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

plastid 1
mitochondrion 4
cytosol 2
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g085280.1.1	Tomato	cytosol, extracellular	100.0	100.0
VIT_04s0023g01810.t01	Wine grape	cytosol, extracellular	96.08	96.08
KRH55238	Soybean	cytosol, mitochondrion	91.18	91.18
Bra024469.1-P	Field mustard	cytosol, mitochondrion	90.2	90.2
CDY13038	Canola	cytosol, mitochondrion	90.2	90.2
CDY29232	Canola	cytosol, mitochondrion	90.2	90.2
CDY65154	Canola	cytosol, mitochondrion	90.2	90.2
KRH34653	Soybean	cytosol, extracellular	90.2	90.2
Bra039612.1-P	Field mustard	cytosol, mitochondrion	89.22	89.22
CDY36480	Canola	cytosol, mitochondrion	89.22	89.22
CDY71465	Canola	cytosol, mitochondrion	89.22	89.22
AT2G18400.1	Thale cress	cytosol, mitochondrion	89.22	89.22
GSMUA_Achr4P07340_001	Banana	cytosol, mitochondrion	61.76	88.73
KRG92137	Soybean	cytosol, extracellular	88.24	88.24
GSMUA_Achr2P08570_001	Banana	mitochondrion	88.24	88.24
EES01089	Sorghum	cytosol, mitochondrion	83.33	82.52
EES07474	Sorghum	cytosol, mitochondrion	82.35	81.55
Os03t0725000-01	Rice	mitochondrion	80.39	79.61
TraesCS6A01G302600.1	Wheat	mitochondrion	79.41	77.88
TraesCS6B01G331800.1	Wheat	mitochondrion	79.41	77.88
TraesCS6D01G282100.1	Wheat	mitochondrion	79.41	77.88
Zm00001d051422_P001	Maize	mitochondrion	79.41	77.88
HORVU4Hr1G009420.1	Barley	mitochondrion	78.43	76.92
TraesCS4B01G056100.1	Wheat	mitochondrion	78.43	76.92
TraesCS4D01G056500.1	Wheat	mitochondrion	78.43	76.92
TraesCS4A01G258300.1	Wheat	cytosol	77.45	75.96
TraesCS5A01G097400.1	Wheat	cytosol, mitochondrion	73.53	74.26
HORVU5Hr1G026360.7	Barley	cytosol, mitochondrion	73.53	72.82
HORVU6Hr1G075100.7	Barley	cytosol	79.41	56.64
PGSC0003DMT400061282	Potato	extracellular	40.2	18.06

Protein Annotations

EntrezGene:102578705	MapMan:17.7.1.1.7	Gene3D:3.90.930.12	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0019843	GO:GO:0030529	InterPro:IPR036789	UniProt:M0ZVF5
PFAM:PF00347	EnsemblPlantsGene:PGSC0003DMG400003504	PGSC:PGSC0003DMG400003504	EnsemblPlants:PGSC0003DMT400009003	PRINTS:PR00059	ScanProsite:PS00525
PANTHER:PTHR11655	PANTHER:PTHR11655:SF17	InterPro:Ribosomal_L6	InterPro:Ribosomal_L6_CS	InterPro:Ribosomal_L6_a/b-dom	InterPro:Ribosomal_L6_a/b-dom_sf
InterPro:Ribosomal_L6_bac-type	SUPFAM:SSF56053	UniParc:UPI000276904E	RefSeq:XP_006340619.1	:	:

Description

50S ribosomal protein L6 [Source:PGSC_GENE;Acc:PGSC0003DMG400003504]

Coordinates

chr2:-:40508240..40511607

Molecular Weight (calculated)

11618.5 Da

IEP (calculated)

10.340

GRAVY (calculated)

-0.168

Length

102 amino acids

Sequence
(BLAST)

001: MEAKFFRFLK IVGVGFKARA ESEGRLLYLK LGYSHEVELT VPPAVRVFCF KPNVVCCTGI DKYRVHQFAA SVRSCKPPEV YKGKGIMYID EVIKKKQGKK
101: SK

Best Arabidopsis Sequence Match ( AT2G18400.1 )
(BLAST)

001: MEAKFFRFLK IVGVGYKARA EEAGRFLYLK LGYSHEVELA VPPAVRVFCF KNNVVCCTGI DKQRVHQFAA TVRSCKPPEP YKGKGIMYTD EVVKKKQGKK
101: SK

Arabidopsis Description

Putative ribosomal protein L6 [Source:UniProtKB/TrEMBL;Acc:Q9ZPX2]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.