Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024469.1-P | Field mustard | cytosol, mitochondrion | 96.08 | 96.08 |
| CDY13038 | Canola | cytosol, mitochondrion | 96.08 | 96.08 |
| CDY29232 | Canola | cytosol, mitochondrion | 96.08 | 96.08 |
| CDY65154 | Canola | cytosol, mitochondrion | 96.08 | 96.08 |
| CDY71465 | Canola | cytosol, mitochondrion | 96.08 | 96.08 |
| Bra039612.1-P | Field mustard | cytosol, mitochondrion | 95.1 | 95.1 |
| CDY36480 | Canola | cytosol, mitochondrion | 95.1 | 95.1 |
| KRH34653 | Soybean | cytosol, extracellular | 93.14 | 93.14 |
| KRH55238 | Soybean | cytosol, mitochondrion | 92.16 | 92.16 |
| KRG92137 | Soybean | cytosol, extracellular | 91.18 | 91.18 |
| Solyc02g085280.1.1 | Tomato | cytosol, extracellular | 89.22 | 89.22 |
| PGSC0003DMT400009003 | Potato | cytosol, extracellular | 89.22 | 89.22 |
| VIT_04s0023g01810.t01 | Wine grape | cytosol, extracellular | 88.24 | 88.24 |
| GSMUA_Achr4P07340_001 | Banana | cytosol, mitochondrion | 58.82 | 84.51 |
| GSMUA_Achr2P08570_001 | Banana | mitochondrion | 84.31 | 84.31 |
| EES01089 | Sorghum | cytosol, mitochondrion | 76.47 | 75.73 |
| EES07474 | Sorghum | cytosol, mitochondrion | 75.49 | 74.76 |
| Os03t0725000-01 | Rice | mitochondrion | 73.53 | 72.82 |
| TraesCS4B01G056100.1 | Wheat | mitochondrion | 72.55 | 71.15 |
| TraesCS4D01G056500.1 | Wheat | mitochondrion | 72.55 | 71.15 |
| TraesCS6A01G302600.1 | Wheat | mitochondrion | 72.55 | 71.15 |
| TraesCS6B01G331800.1 | Wheat | mitochondrion | 72.55 | 71.15 |
| TraesCS6D01G282100.1 | Wheat | mitochondrion | 72.55 | 71.15 |
| Zm00001d051422_P001 | Maize | mitochondrion | 72.55 | 71.15 |
| HORVU4Hr1G009420.1 | Barley | mitochondrion | 71.57 | 70.19 |
| TraesCS4A01G258300.1 | Wheat | cytosol | 71.57 | 70.19 |
| TraesCS5A01G097400.1 | Wheat | cytosol, mitochondrion | 67.65 | 68.32 |
| HORVU5Hr1G026360.7 | Barley | cytosol, mitochondrion | 67.65 | 66.99 |
| HORVU6Hr1G075100.7 | Barley | cytosol | 72.55 | 51.75 |
| AT1G05190.1 | Thale cress | plastid | 45.1 | 20.63 |
Protein Annotations
| MapMan:17.7.1.1.7 | Gene3D:3.90.930.12 | EntrezGene:816355 | UniProt:A0A178VTV9 | ProteinID:AAD15497.2 | ProteinID:AEC06765.1 |
| ArrayExpress:AT2G18400 | EnsemblPlantsGene:AT2G18400 | RefSeq:AT2G18400 | TAIR:AT2G18400 | RefSeq:AT2G18400-TAIR-G | EnsemblPlants:AT2G18400.1 |
| TAIR:AT2G18400.1 | EMBL:AY044317 | EMBL:AY088468 | Unigene:At.13887 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0019843 | GO:GO:0030529 | InterPro:IPR036789 |
| RefSeq:NP_565438.1 | ProteinID:OAP09238.1 | PFAM:PF00347 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR00059 | ScanProsite:PS00525 | PANTHER:PTHR11655 |
| PANTHER:PTHR11655:SF17 | UniProt:Q9ZPX2 | InterPro:Ribosomal_L6 | InterPro:Ribosomal_L6_CS | InterPro:Ribosomal_L6_a/b-dom | InterPro:Ribosomal_L6_a/b-dom_sf |
| InterPro:Ribosomal_L6_bac-type | SUPFAM:SSF56053 | UniParc:UPI000009F778 | SEG:seg | : | : |
Description
Putative ribosomal protein L6 [Source:UniProtKB/TrEMBL;Acc:Q9ZPX2]
Coordinates
chr2:-:7989476..7990586
Molecular Weight (calculated)
11590.3 Da
IEP (calculated)
10.340
GRAVY (calculated)
-0.318
Length
102 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAKFFRFLK IVGVGYKARA EEAGRFLYLK LGYSHEVELA VPPAVRVFCF KNNVVCCTGI DKQRVHQFAA TVRSCKPPEP YKGKGIMYTD EVVKKKQGKK
101: SK
101: SK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.