Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- cytosol 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY70611 | Canola | plastid | 95.07 | 95.07 |
| CDY46838 | Canola | plastid | 94.62 | 94.62 |
| CDY49511 | Canola | plastid | 94.62 | 94.62 |
| Bra032481.1-P | Field mustard | plastid | 94.62 | 94.2 |
| CDY06163 | Canola | plastid | 94.17 | 93.75 |
| Bra015397.1-P | Field mustard | plastid | 93.72 | 93.72 |
| VIT_12s0059g02250.t01 | Wine grape | plastid | 81.17 | 80.09 |
| KRH09014 | Soybean | nucleus | 80.27 | 79.2 |
| KRH38479 | Soybean | plastid | 79.37 | 78.32 |
| PGSC0003DMT400061282 | Potato | extracellular | 78.03 | 76.65 |
| GSMUA_Achr5P16270_001 | Banana | plastid | 72.65 | 71.68 |
| Os03t0751400-01 | Rice | plastid | 71.75 | 70.8 |
| HORVU4Hr1G040950.1 | Barley | plastid | 70.85 | 69.91 |
| TraesCS4B01G157100.1 | Wheat | plastid | 70.85 | 69.91 |
| TraesCS4D01G164500.1 | Wheat | golgi | 70.85 | 69.91 |
| TraesCS5A01G279700.1 | Wheat | golgi | 70.85 | 69.91 |
| Os03t0356300-01 | Rice | nucleus | 70.4 | 69.47 |
| TraesCS4A01G144500.1 | Wheat | plastid | 70.4 | 69.47 |
| EER92258 | Sorghum | plastid | 69.06 | 68.14 |
| Solyc12g100160.1.1 | Tomato | plastid | 78.03 | 67.7 |
| Zm00001d029201_P001 | Maize | plastid | 67.71 | 66.81 |
| Zm00001d047462_P001 | Maize | cytosol | 66.82 | 50.0 |
| AT2G18400.1 | Thale cress | cytosol, mitochondrion | 20.63 | 45.1 |
Protein Annotations
| MapMan:17.7.2.1.6 | Gene3D:3.90.930.12 | EntrezGene:839273 | UniProt:A0A178W979 | ProteinID:AAB71459.1 | ProteinID:AEE27802.1 |
| EMBL:AF360265 | ArrayExpress:AT1G05190 | EnsemblPlantsGene:AT1G05190 | RefSeq:AT1G05190 | TAIR:AT1G05190 | RefSeq:AT1G05190-TAIR-G |
| EnsemblPlants:AT1G05190.1 | TAIR:AT1G05190.1 | EMBL:AY040077 | EMBL:AY085715 | GO:GO:0000003 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009570 |
| GO:GO:0009719 | GO:GO:0009735 | GO:GO:0009790 | GO:GO:0009791 | GO:GO:0009793 | GO:GO:0009941 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0019538 | GO:GO:0019843 | GO:GO:0030529 | InterPro:IPR036789 |
| HAMAP:MF_01365_B | RefSeq:NP_172011.1 | UniProt:O23049 | ProteinID:OAP13622.1 | PFAM:PF00347 | PIRSF:PIRSF002162 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009001 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PRINTS:PR00059 | ScanProsite:PS00525 | PANTHER:PTHR11655 | PANTHER:PTHR11655:SF14 | InterPro:Ribosomal_L6 |
| InterPro:Ribosomal_L6_CS | InterPro:Ribosomal_L6_a/b-dom | InterPro:Ribosomal_L6_a/b-dom_sf | InterPro:Ribosomal_L6_bac-type | SUPFAM:SSF56053 | TIGRFAMs:TIGR03654 |
| UniParc:UPI00000A8242 | Symbol:emb2394 | : | : | : | : |
Description
RPL650S ribosomal protein L6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O23049]
Coordinates
chr1:-:1502251..1503853
Molecular Weight (calculated)
24707.0 Da
IEP (calculated)
10.555
GRAVY (calculated)
-0.435
Length
223 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSLVSSFQ PRSAFLGDRN VFKVSSTPFA QVGYSSKTIE CKESRIGKQP IAVPSNVTIA LEGQDLKVKG PLGELALTYP REVELTKEES GFLRVKKTVE
101: TRRANQMHGL FRTLTDNMVV GVSKGFEKKL ILVGVGYRAT VDGKELVLNL GFSHPVKMQI PDSLKVKVEE NTRITVSGYD KSEIGQFAAT VRKWRPPEPY
201: KGKGVKYSDE IVRRKEGKAG KKK
101: TRRANQMHGL FRTLTDNMVV GVSKGFEKKL ILVGVGYRAT VDGKELVLNL GFSHPVKMQI PDSLKVKVEE NTRITVSGYD KSEIGQFAAT VRKWRPPEPY
201: KGKGVKYSDE IVRRKEGKAG KKK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.