Factsheet for Bra015397.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49511	Canola	plastid	99.1	99.1
CDY46838	Canola	plastid	98.21	98.21
AT1G05190.1	Thale cress	plastid	93.72	93.72
Bra032481.1-P	Field mustard	plastid	92.83	92.41
VIT_12s0059g02250.t01	Wine grape	plastid	79.37	78.32
KRH09014	Soybean	nucleus	78.03	76.99
KRH38479	Soybean	plastid	77.58	76.55
PGSC0003DMT400061282	Potato	extracellular	77.13	75.77
GSMUA_Achr5P16270_001	Banana	plastid	70.85	69.91
Os03t0751400-01	Rice	plastid	70.85	69.91
HORVU4Hr1G040950.1	Barley	plastid	70.4	69.47
TraesCS4B01G157100.1	Wheat	plastid	70.4	69.47
TraesCS4D01G164500.1	Wheat	golgi	70.4	69.47
TraesCS5A01G279700.1	Wheat	golgi	70.4	69.47
TraesCS4A01G144500.1	Wheat	plastid	69.96	69.03
Os03t0356300-01	Rice	nucleus	69.51	68.58
EER92258	Sorghum	plastid	68.16	67.26
Zm00001d029201_P001	Maize	plastid	67.71	66.81
Solyc12g100160.1.1	Tomato	plastid	76.23	66.15
Bra035618.1-P	Field mustard	endoplasmic reticulum, golgi	61.44	60.09
Zm00001d047462_P001	Maize	cytosol	66.37	49.66
Bra039612.1-P	Field mustard	cytosol, mitochondrion	20.63	45.1
Bra024469.1-P	Field mustard	cytosol, mitochondrion	20.63	45.1

Protein Annotations

MapMan:17.7.2.1.6	Gene3D:3.90.930.12	EnsemblPlantsGene:Bra015397	EnsemblPlants:Bra015397.1	EnsemblPlants:Bra015397.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0019843	GO:GO:0030529
InterPro:IPR036789	UniProt:M4DFX4	HAMAP:MF_01365_B	PFAM:PF00347	PIRSF:PIRSF002162	PRINTS:PR00059
ScanProsite:PS00525	PANTHER:PTHR11655	PANTHER:PTHR11655:SF14	InterPro:Ribosomal_L6	InterPro:Ribosomal_L6_CS	InterPro:Ribosomal_L6_a/b-dom
InterPro:Ribosomal_L6_a/b-dom_sf	InterPro:Ribosomal_L6_bac-type	SUPFAM:SSF56053	TIGRFAMs:TIGR03654	UniParc:UPI0002543ACA	:

Description

AT1G05190 (E=1e-116) emb2394 | emb2394 (embryo defective 2394); structural constituent of ribosome

Coordinates

chrA10:+:2079874..2081035

Molecular Weight (calculated)

24701.3 Da

IEP (calculated)

10.670

GRAVY (calculated)

-0.392

Length

223 amino acids

Sequence
(BLAST)

001: MASSVVTSFQ PRSAFLGDRN VFKVLATPSA QVGYSRKTIQ CKESRIGKQP IAVPTNVTIA LEGQDLKVKG PLGELALTYP REVELIKEDA GVLRVKKTVE
101: TRRANQMHGL FRTLTDNMVV GVSKGFEKKL ILVGVGYRAT VEGKELVLNL GFSHPVKMQI PESLKVKVEE NTRITVSGYD KSEIGQFAAT VRKWRPPEPY
201: KGKGVKYSDE IVRRKEGKAG KKK

Best Arabidopsis Sequence Match ( AT1G05190.1 )
(BLAST)

001: MASSLVSSFQ PRSAFLGDRN VFKVSSTPFA QVGYSSKTIE CKESRIGKQP IAVPSNVTIA LEGQDLKVKG PLGELALTYP REVELTKEES GFLRVKKTVE
101: TRRANQMHGL FRTLTDNMVV GVSKGFEKKL ILVGVGYRAT VDGKELVLNL GFSHPVKMQI PDSLKVKVEE NTRITVSGYD KSEIGQFAAT VRKWRPPEPY
201: KGKGVKYSDE IVRRKEGKAG KKK

Arabidopsis Description

RPL650S ribosomal protein L6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O23049]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.