CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra015397.1-P	Field mustard	plastid	99.1	99.1
CDY46838	Canola	plastid	98.21	98.21
CDY70611	Canola	plastid	94.62	94.62
AT1G05190.1	Thale cress	plastid	94.62	94.62
CDY06163	Canola	plastid	93.27	92.86
VIT_12s0059g02250.t01	Wine grape	plastid	79.82	78.76
KRH09014	Soybean	nucleus	78.48	77.43
KRH38479	Soybean	plastid	78.03	76.99
PGSC0003DMT400061282	Potato	extracellular	77.58	76.21
GSMUA_Achr5P16270_001	Banana	plastid	71.75	70.8
Os03t0751400-01	Rice	plastid	70.85	69.91
HORVU4Hr1G040950.1	Barley	plastid	70.4	69.47
TraesCS5A01G279700.1	Wheat	golgi	70.4	69.47
TraesCS4D01G164500.1	Wheat	golgi	70.4	69.47
TraesCS4B01G157100.1	Wheat	plastid	70.4	69.47
TraesCS4A01G144500.1	Wheat	plastid	69.96	69.03
Os03t0356300-01	Rice	nucleus	69.51	68.58
EER92258	Sorghum	plastid	68.16	67.26
Zm00001d029201_P001	Maize	plastid	67.71	66.81
Solyc12g100160.1.1	Tomato	plastid	76.68	66.54
CDY41816	Canola	endoplasmic reticulum	61.44	65.87
Zm00001d047462_P001	Maize	cytosol	66.37	49.66
CDY71465	Canola	cytosol, mitochondrion	20.63	45.1
CDY65154	Canola	cytosol, mitochondrion	20.63	45.1
CDY29232	Canola	cytosol, mitochondrion	20.63	45.1
CDY13038	Canola	cytosol, mitochondrion	20.63	45.1
CDY36480	Canola	cytosol, mitochondrion	20.18	44.12

Protein Annotations

MapMan:17.7.2.1.6	Gene3D:3.90.930.12	GO:A0A078IHR7	UniProt:A0A078IHR7	EnsemblPlants:CDY49511	ProteinID:CDY49511
ProteinID:CDY49511.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
GO:GO:0019843	GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00093198001	InterPro:IPR036789	HAMAP:MF_01365_B	PFAM:PF00347
PIRSF:PIRSF002162	PRINTS:PR00059	ScanProsite:PS00525	PANTHER:PTHR11655	PANTHER:PTHR11655:SF14	InterPro:Ribosomal_L6
InterPro:Ribosomal_L6_CS	InterPro:Ribosomal_L6_a/b-dom	InterPro:Ribosomal_L6_a/b-dom_sf	InterPro:Ribosomal_L6_bac-type	SUPFAM:SSF56053	TIGRFAMs:TIGR03654
UniParc:UPI000182AF5F	:	:	:	:	:

Description

BnaC05g03230DBnaC05g03230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IHR7]

Coordinates

chrLK032838:-:36644..38072

Molecular Weight (calculated)

24723.2 Da

IEP (calculated)

10.670

GRAVY (calculated)

-0.419

Length

223 amino acids

Sequence
(BLAST)

001: MASSVVTSFQ PRSAFLGDRN VFKVSATPSA QVGYSRKTIQ CKESRIGKQP IAVPTNVTIA LEGQDLKVKG PLGELALTYP REVELIKEDA GFLRVKKTVE
101: TRRANQMHGL FRTLTDNMVV GVSKGFEKKL ILVGVGYRAT VEGKELVLNL GFSHPVKMQI PESLKVKVEE NTRITVSGYD KSEIGQFAAT VRKWRPPEPY
201: KGKGVKYSDE IVRRKEGKAG KKK

Best Arabidopsis Sequence Match ( AT1G05190.1 )
(BLAST)

001: MASSLVSSFQ PRSAFLGDRN VFKVSSTPFA QVGYSSKTIE CKESRIGKQP IAVPSNVTIA LEGQDLKVKG PLGELALTYP REVELTKEES GFLRVKKTVE
101: TRRANQMHGL FRTLTDNMVV GVSKGFEKKL ILVGVGYRAT VDGKELVLNL GFSHPVKMQI PDSLKVKVEE NTRITVSGYD KSEIGQFAAT VRKWRPPEPY
201: KGKGVKYSDE IVRRKEGKAG KKK

Arabidopsis Description

RPL650S ribosomal protein L6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O23049]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.