Factsheet for Zm00001d047462_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92258	Sorghum	plastid	70.13	92.48
Zm00001d029201_P001	Maize	plastid	69.13	91.15
Os03t0356300-01	Rice	nucleus	64.43	84.96
Os03t0751400-01	Rice	plastid	63.42	83.63
HORVU4Hr1G040950.1	Barley	plastid	63.42	83.63
TraesCS4D01G164500.1	Wheat	golgi	62.75	82.74
TraesCS4B01G157100.1	Wheat	plastid	62.42	82.3
TraesCS5A01G279700.1	Wheat	golgi	62.08	81.86
TraesCS4A01G144500.1	Wheat	plastid	61.74	81.42
VIT_12s0059g02250.t01	Wine grape	plastid	52.68	69.47
KRH38479	Soybean	plastid	51.68	68.14
CDY70611	Canola	plastid	50.67	67.71
KRH09014	Soybean	nucleus	51.34	67.7
PGSC0003DMT400061282	Potato	extracellular	51.34	67.4
Bra032481.1-P	Field mustard	plastid	50.34	66.96
CDY46838	Canola	plastid	50.0	66.82
AT1G05190.1	Thale cress	plastid	50.0	66.82
CDY06163	Canola	plastid	50.0	66.52
Bra015397.1-P	Field mustard	plastid	49.66	66.37
CDY49511	Canola	plastid	49.66	66.37
GSMUA_Achr5P16270_001	Banana	plastid	49.66	65.49
Solyc12g100160.1.1	Tomato	plastid	51.34	59.53
CDY41816	Canola	endoplasmic reticulum	35.91	51.44
Bra035618.1-P	Field mustard	endoplasmic reticulum, golgi	37.58	49.12
Zm00001d051422_P001	Maize	mitochondrion	14.77	42.31

Protein Annotations

EntrezGene:100282171	MapMan:17.7.2.1.6	Gene3D:3.90.930.12	UniProt:A0A1D6P9Z8	ProteinID:AQL06568.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0019843	GO:GO:0030529
InterPro:IPR036789	HAMAP:MF_01365_B	PFAM:PF00347	PRINTS:PR00059	ScanProsite:PS00525	PANTHER:PTHR11655
PANTHER:PTHR11655:SF14	InterPro:Ribosomal_L6	InterPro:Ribosomal_L6_CS	InterPro:Ribosomal_L6_a/b-dom	InterPro:Ribosomal_L6_a/b-dom_sf	InterPro:Ribosomal_L6_bac-type
SUPFAM:SSF56053	TIGRFAMs:TIGR03654	UniParc:UPI0008426FE6	EnsemblPlantsGene:Zm00001d047462	EnsemblPlants:Zm00001d047462_P001	EnsemblPlants:Zm00001d047462_T001
SEG:seg	:	:	:	:	:

Description

50S ribosomal protein L6 chloroplastic

Coordinates

chr9:+:130897731..130901561

Molecular Weight (calculated)

32404.4 Da

IEP (calculated)

10.356

GRAVY (calculated)

-0.361

Length

298 amino acids

Sequence
(BLAST)

001: MCKLRPERQD KNRAPAGSCS CDCERPSNGV PLPFPPPPLS NQNSVKCSQQ AAASSCISVT VGTRKSTSIF GGQYCISSGI PICSNSRTGF LGKTRGIRPC
101: VFPAGRVGFV RTVVECKESR IGKQPIEVPS NVTLTLEEQF VKAKGPLGEL SLSFPGDLKI VKEESGNLRV YKTAETKRAN QMHGLFRTLT DNIIVGVSKG
201: FDKKLQLVGV GYRAAVEGND LVMNLGFSHP VRMAIPEGLA VKVEENTRII VSGYDKSAIG QFAATIKKWR PPEPYKGKGI RYMDEVVRRK EGKAGKKK

Best Arabidopsis Sequence Match ( AT1G05190.1 )
(BLAST)

001: MASSLVSSFQ PRSAFLGDRN VFKVSSTPFA QVGYSSKTIE CKESRIGKQP IAVPSNVTIA LEGQDLKVKG PLGELALTYP REVELTKEES GFLRVKKTVE
101: TRRANQMHGL FRTLTDNMVV GVSKGFEKKL ILVGVGYRAT VDGKELVLNL GFSHPVKMQI PDSLKVKVEE NTRITVSGYD KSEIGQFAAT VRKWRPPEPY
201: KGKGVKYSDE IVRRKEGKAG KKK

Arabidopsis Description

RPL650S ribosomal protein L6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O23049]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.