Factsheet for TraesCS4D01G164500.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G157100.1	Wheat	plastid	99.56	99.56
TraesCS5A01G279700.1	Wheat	golgi	98.67	98.67
HORVU4Hr1G040950.1	Barley	plastid	98.67	98.67
TraesCS4A01G144500.1	Wheat	plastid	98.23	98.23
Os03t0356300-01	Rice	nucleus	93.81	93.81
Os03t0751400-01	Rice	plastid	92.48	92.48
EER92258	Sorghum	plastid	87.61	87.61
Zm00001d029201_P001	Maize	plastid	84.96	84.96
VIT_12s0059g02250.t01	Wine grape	plastid	73.89	73.89
PGSC0003DMT400061282	Potato	extracellular	71.68	71.37
CDY70611	Canola	plastid	70.35	71.3
CDY46838	Canola	plastid	69.91	70.85
AT1G05190.1	Thale cress	plastid	69.91	70.85
GSMUA_Achr5P16270_001	Banana	plastid	70.8	70.8
Bra032481.1-P	Field mustard	plastid	69.91	70.54
CDY49511	Canola	plastid	69.47	70.4
Bra015397.1-P	Field mustard	plastid	69.47	70.4
CDY06163	Canola	plastid	69.47	70.09
KRH09014	Soybean	nucleus	69.03	69.03
KRH38479	Soybean	plastid	68.58	68.58
Solyc12g100160.1.1	Tomato	plastid	72.57	63.81
Zm00001d047462_P001	Maize	cytosol	82.74	62.75
CDY41816	Canola	endoplasmic reticulum	49.56	53.85
Bra035618.1-P	Field mustard	endoplasmic reticulum, golgi	51.33	50.88
TraesCS4D01G056500.1	Wheat	mitochondrion	18.14	39.42
TraesCS6D01G282100.1	Wheat	mitochondrion	18.14	39.42

Protein Annotations

MapMan:17.7.2.1.6	Gene3D:3.90.930.12	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009719	GO:GO:0009735
GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009941	GO:GO:0009987	GO:GO:0016020
GO:GO:0019538	GO:GO:0019843	InterPro:IPR036789	HAMAP:MF_01365_B	PFAM:PF00347	PIRSF:PIRSF002162
PRINTS:PR00059	ScanProsite:PS00525	PANTHER:PTHR11655	PANTHER:PTHR11655:SF14	InterPro:Ribosomal_L6	InterPro:Ribosomal_L6_CS
InterPro:Ribosomal_L6_a/b-dom	InterPro:Ribosomal_L6_a/b-dom_sf	InterPro:Ribosomal_L6_bac-type	SUPFAM:SSF56053	TIGRFAMs:TIGR03654	EnsemblPlantsGene:TraesCS4D01G164500
EnsemblPlants:TraesCS4D01G164500.1	:	:	:	:	:

Description

No Description!

Coordinates

chr4D:+:265372317..265374956

Molecular Weight (calculated)

25146.0 Da

IEP (calculated)

10.715

GRAVY (calculated)

-0.392

Length

226 amino acids

Sequence
(BLAST)

001: MASLSPSLHL PCNSRTGFLG KSQGILLRVI PAGRVGFIRK TVECKESRIG KKPIEVPSNV TLTLEEQFVK AKGPLGELSL NYPTEVKVVK EETGKLRVFK
101: TVETKRANQM HGLFRTLTDN IIVGVSKGFD KRLQLVGVGY RATVEGKDLV MNLGFSHPVR MAVPEGLQVK VEENTRIIVS GYDKSEIGQF AATIKKWRPP
201: EPYKGKGIRY QDEIVRRKEG KAGKKK

Best Arabidopsis Sequence Match ( AT1G05190.1 )
(BLAST)

001: MASSLVSSFQ PRSAFLGDRN VFKVSSTPFA QVGYSSKTIE CKESRIGKQP IAVPSNVTIA LEGQDLKVKG PLGELALTYP REVELTKEES GFLRVKKTVE
101: TRRANQMHGL FRTLTDNMVV GVSKGFEKKL ILVGVGYRAT VDGKELVLNL GFSHPVKMQI PDSLKVKVEE NTRITVSGYD KSEIGQFAAT VRKWRPPEPY
201: KGKGVKYSDE IVRRKEGKAG KKK

Arabidopsis Description

RPL650S ribosomal protein L6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O23049]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.