Factsheet for Os03t0751400-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 21433289

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0356300-01	Rice	nucleus	96.02	96.02
TraesCS4D01G164500.1	Wheat	golgi	92.48	92.48
HORVU4Hr1G040950.1	Barley	plastid	92.48	92.48
TraesCS4B01G157100.1	Wheat	plastid	92.04	92.04
TraesCS5A01G279700.1	Wheat	golgi	91.59	91.59
TraesCS4A01G144500.1	Wheat	plastid	91.15	91.15
EER92258	Sorghum	plastid	87.61	87.61
Zm00001d029201_P001	Maize	plastid	85.84	85.84
VIT_12s0059g02250.t01	Wine grape	plastid	74.78	74.78
PGSC0003DMT400061282	Potato	extracellular	72.57	72.25
CDY70611	Canola	plastid	71.24	72.2
AT1G05190.1	Thale cress	plastid	70.8	71.75
Bra032481.1-P	Field mustard	plastid	70.8	71.43
CDY46838	Canola	plastid	70.35	71.3
CDY06163	Canola	plastid	70.35	70.98
CDY49511	Canola	plastid	69.91	70.85
Bra015397.1-P	Field mustard	plastid	69.91	70.85
KRH09014	Soybean	nucleus	70.8	70.8
KRH38479	Soybean	plastid	70.8	70.8
GSMUA_Achr5P16270_001	Banana	plastid	70.35	70.35
Solyc12g100160.1.1	Tomato	plastid	72.57	63.81
Zm00001d047462_P001	Maize	cytosol	83.63	63.42
CDY41816	Canola	endoplasmic reticulum	49.12	53.37
Bra035618.1-P	Field mustard	endoplasmic reticulum, golgi	51.77	51.32
Os03t0725000-01	Rice	mitochondrion	18.14	39.81

Protein Annotations

MapMan:17.7.2.1.6	Gene3D:3.90.930.12	EntrezGene:4334131	ProteinID:AAO32311.1	ProteinID:AAR87250.1	ProteinID:ABF98910.1
EMBL:AK069033	ProteinID:BAF13206.1	ProteinID:BAS86417.1	ProteinID:EAZ28603.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0019843	InterPro:IPR036789	HAMAP:MF_01365_B
EnsemblPlantsGene:Os03g0751400	EnsemblPlants:Os03t0751400-01	PFAM:PF00347	PIRSF:PIRSF002162	PRINTS:PR00059	ScanProsite:PS00525
PANTHER:PTHR11655	PANTHER:PTHR11655:SF14	UniProt:Q850L8	InterPro:Ribosomal_L6	InterPro:Ribosomal_L6_CS	InterPro:Ribosomal_L6_a/b-dom
InterPro:Ribosomal_L6_a/b-dom_sf	InterPro:Ribosomal_L6_bac-type	SUPFAM:SSF56053	TIGRFAMs:TIGR03654	UniParc:UPI00000030DB	RefSeq:XP_015627881.1

Description

Similar to 50S ribosomal protein l6. (Os03t0751400-01)

Coordinates

chr3:+:30981065..30984498

Molecular Weight (calculated)

24978.8 Da

IEP (calculated)

10.667

GRAVY (calculated)

-0.395

Length

226 amino acids

Sequence
(BLAST)

001: MASLSLSLHH PCNSRTGFLG KRQGICLHVI PAGRVGFVRK TIECKESRIG KKPIEVPSNV TLTLEEQFIK AKGPLGELSL NYPGEVKVVK EESGKLRVSK
101: TVETKRANQM HGLFRTLTDN IIVGVSKGFD KKLQLVGVGY RAAVEGKDLV MNLGFSHPVR MAVPEGLKVK VEENTRIIVS GYDKSEIGQF AASIKKWRPP
201: EPYKGKGIRY ADEVVRRKEG KAGKKK

Best Arabidopsis Sequence Match ( AT1G05190.1 )
(BLAST)

001: MASSLVSSFQ PRSAFLGDRN VFKVSSTPFA QVGYSSKTIE CKESRIGKQP IAVPSNVTIA LEGQDLKVKG PLGELALTYP REVELTKEES GFLRVKKTVE
101: TRRANQMHGL FRTLTDNMVV GVSKGFEKKL ILVGVGYRAT VDGKELVLNL GFSHPVKMQI PDSLKVKVEE NTRITVSGYD KSEIGQFAAT VRKWRPPEPY
201: KGKGVKYSDE IVRRKEGKAG KKK

Arabidopsis Description

RPL650S ribosomal protein L6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O23049]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.