CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032481.1-P	Field mustard	plastid	99.55	99.55
CDY70611	Canola	plastid	95.98	96.41
AT1G05190.1	Thale cress	plastid	93.75	94.17
CDY46838	Canola	plastid	92.86	93.27
CDY49511	Canola	plastid	92.86	93.27
VIT_12s0059g02250.t01	Wine grape	plastid	80.36	79.65
KRH38479	Soybean	plastid	78.57	77.88
KRH09014	Soybean	nucleus	78.57	77.88
PGSC0003DMT400061282	Potato	extracellular	77.68	76.65
GSMUA_Achr5P16270_001	Banana	plastid	72.32	71.68
Os03t0751400-01	Rice	plastid	70.98	70.35
HORVU4Hr1G040950.1	Barley	plastid	70.09	69.47
TraesCS5A01G279700.1	Wheat	golgi	70.09	69.47
TraesCS4D01G164500.1	Wheat	golgi	70.09	69.47
TraesCS4B01G157100.1	Wheat	plastid	70.09	69.47
Os03t0356300-01	Rice	nucleus	69.64	69.03
TraesCS4A01G144500.1	Wheat	plastid	69.64	69.03
Solyc12g100160.1.1	Tomato	plastid	77.68	67.7
EER92258	Sorghum	plastid	68.3	67.7
Zm00001d029201_P001	Maize	plastid	67.41	66.81
CDY41816	Canola	endoplasmic reticulum	60.71	65.38
Zm00001d047462_P001	Maize	cytosol	66.52	50.0
CDY71465	Canola	cytosol, mitochondrion	20.54	45.1
CDY65154	Canola	cytosol, mitochondrion	20.54	45.1
CDY29232	Canola	cytosol, mitochondrion	20.54	45.1
CDY13038	Canola	cytosol, mitochondrion	20.54	45.1
CDY36480	Canola	cytosol, mitochondrion	20.09	44.12

Protein Annotations

MapMan:17.7.2.1.6	Gene3D:3.90.930.12	GO:A0A078F343	EnsemblPlants:CDY06163	ProteinID:CDY06163	ProteinID:CDY06163.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0019843
EnsemblPlantsGene:GSBRNA2T00122057001	InterPro:IPR036789	HAMAP:MF_01365_B	PFAM:PF00347	PIRSF:PIRSF002162	PRINTS:PR00059
ScanProsite:PS00525	PANTHER:PTHR11655	PANTHER:PTHR11655:SF14	InterPro:Ribosomal_L6	InterPro:Ribosomal_L6_CS	InterPro:Ribosomal_L6_a/b-dom
InterPro:Ribosomal_L6_a/b-dom_sf	InterPro:Ribosomal_L6_bac-type	SUPFAM:SSF56053	TIGRFAMs:TIGR03654	UniParc:UPI0004EDE8B7	SEG:seg

Description

BnaA09g50400D

Coordinates

chrLK031968:-:70371..71862

Molecular Weight (calculated)

24817.2 Da

IEP (calculated)

10.658

GRAVY (calculated)

-0.433

Length

224 amino acids

Sequence
(BLAST)

001: MASSVVSSFQ PRSSFLGDRN AFKVSTTPPF TQVGFSSKTI ECKESRIGKQ PISVPSNVTI ALAGQDLKVK GPLGELALTY PREVELLKED SGFLRVKKTV
101: ETRRANQMHG LFRTLTDNMV VGVSKGFEKK LILVGVGYRA TVEGKELVLN LGFSHPVKMQ IPESLKVKVE ENTRITVSGY DKNEIGQFAA TVRKWRPPEP
201: YKGKGVKYSD EIVRRKEGKA GKKK

Best Arabidopsis Sequence Match ( AT1G05190.1 )
(BLAST)

001: MASSLVSSFQ PRSAFLGDRN VFKVSSTPFA QVGYSSKTIE CKESRIGKQP IAVPSNVTIA LEGQDLKVKG PLGELALTYP REVELTKEES GFLRVKKTVE
101: TRRANQMHGL FRTLTDNMVV GVSKGFEKKL ILVGVGYRAT VDGKELVLNL GFSHPVKMQI PDSLKVKVEE NTRITVSGYD KSEIGQFAAT VRKWRPPEPY
201: KGKGVKYSDE IVRRKEGKAG KKK

Arabidopsis Description

RPL650S ribosomal protein L6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O23049]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.