Factsheet for Solyc12g100160.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400061282	Potato	extracellular	84.82	96.04
VIT_12s0059g02250.t01	Wine grape	plastid	69.65	79.2
CDY70611	Canola	plastid	68.09	78.48
Bra032481.1-P	Field mustard	plastid	68.09	78.12
AT1G05190.1	Thale cress	plastid	67.7	78.03
CDY06163	Canola	plastid	67.7	77.68
KRH09014	Soybean	nucleus	68.09	77.43
CDY46838	Canola	plastid	66.93	77.13
KRH38479	Soybean	plastid	67.7	76.99
CDY49511	Canola	plastid	66.54	76.68
Bra015397.1-P	Field mustard	plastid	66.15	76.23
HORVU4Hr1G040950.1	Barley	plastid	64.59	73.45
Os03t0356300-01	Rice	nucleus	64.2	73.01
Os03t0751400-01	Rice	plastid	63.81	72.57
TraesCS4B01G157100.1	Wheat	plastid	63.81	72.57
TraesCS4D01G164500.1	Wheat	golgi	63.81	72.57
TraesCS5A01G279700.1	Wheat	golgi	63.81	72.57
TraesCS4A01G144500.1	Wheat	plastid	63.42	72.12
GSMUA_Achr5P16270_001	Banana	plastid	61.48	69.91
EER92258	Sorghum	plastid	61.48	69.91
Zm00001d029201_P001	Maize	plastid	60.7	69.03
CDY41816	Canola	endoplasmic reticulum	46.69	57.69
Bra035618.1-P	Field mustard	endoplasmic reticulum, golgi	47.47	53.51
Zm00001d047462_P001	Maize	cytosol	59.53	51.34
Solyc02g085280.1.1	Tomato	cytosol, extracellular	16.34	41.18

Protein Annotations

MapMan:17.7.2.1.6	Gene3D:3.90.930.12	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0019843	GO:GO:0030529	InterPro:IPR036789	UniProt:K4DI37	HAMAP:MF_01365_B
PFAM:PF00347	PRINTS:PR00059	ScanProsite:PS00525	PANTHER:PTHR11655	PANTHER:PTHR11655:SF14	InterPro:Ribosomal_L6
InterPro:Ribosomal_L6_CS	InterPro:Ribosomal_L6_a/b-dom	InterPro:Ribosomal_L6_a/b-dom_sf	InterPro:Ribosomal_L6_bac-type	SUPFAM:SSF56053	EnsemblPlantsGene:Solyc12g100160.1
EnsemblPlants:Solyc12g100160.1.1	TIGRFAMs:TIGR03654	UniParc:UPI000276AB71	SEG:seg	:	:

Description

50S ribosomal protein L6, chloroplastic [Source:Projected from Arabidopsis thaliana (AT1G05190) UniProtKB/Swiss-Prot;Acc:O23049]

Coordinates

chr12:+:66989723..66993892

Molecular Weight (calculated)

28278.6 Da

IEP (calculated)

10.853

GRAVY (calculated)

-0.388

Length

257 amino acids

Sequence
(BLAST)

001: MCKAKRALST IQDSSALKRL SLVACRQNSK MSSSSLTASL HASTLRSPFV GSLNGFHVSS VAVRRVGFVS KTVECKESRI GKQPISVPSN VTLTMEGQDL
101: KVKGPLGEMA ITYPREVKLE KEDGGILRVR KAMETRRANQ MHGLFRTLTD NMVVGVSKGF EKKLQLVGVG YRATIEGKDI VLNLGFSHPV RMEVPAGLQV
201: KVEENTRITV SGYDKSEIGQ FAASIRKWRP PEPYKGKGVK YADEIVRRKE GKAGKKK

Best Arabidopsis Sequence Match ( AT1G05190.1 )
(BLAST)

001: MASSLVSSFQ PRSAFLGDRN VFKVSSTPFA QVGYSSKTIE CKESRIGKQP IAVPSNVTIA LEGQDLKVKG PLGELALTYP REVELTKEES GFLRVKKTVE
101: TRRANQMHGL FRTLTDNMVV GVSKGFEKKL ILVGVGYRAT VDGKELVLNL GFSHPVKMQI PDSLKVKVEE NTRITVSGYD KSEIGQFAAT VRKWRPPEPY
201: KGKGVKYSDE IVRRKEGKAG KKK

Arabidopsis Description

RPL650S ribosomal protein L6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O23049]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.