Factsheet for GSMUA_Achr5P16270_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0059g02250.t01	Wine grape	plastid	79.65	79.65
AT1G05190.1	Thale cress	plastid	71.68	72.65
Bra032481.1-P	Field mustard	plastid	71.68	72.32
CDY06163	Canola	plastid	71.68	72.32
CDY70611	Canola	plastid	71.24	72.2
CDY46838	Canola	plastid	70.8	71.75
CDY49511	Canola	plastid	70.8	71.75
PGSC0003DMT400061282	Potato	extracellular	71.24	70.93
Bra015397.1-P	Field mustard	plastid	69.91	70.85
TraesCS4D01G164500.1	Wheat	golgi	70.8	70.8
TraesCS4B01G157100.1	Wheat	plastid	70.8	70.8
HORVU4Hr1G040950.1	Barley	plastid	70.8	70.8
TraesCS5A01G279700.1	Wheat	golgi	70.35	70.35
Os03t0751400-01	Rice	plastid	70.35	70.35
KRH09014	Soybean	nucleus	69.91	69.91
TraesCS4A01G144500.1	Wheat	plastid	69.91	69.91
Os03t0356300-01	Rice	nucleus	69.91	69.91
KRH38479	Soybean	plastid	69.91	69.91
EER92258	Sorghum	plastid	68.14	68.14
Zm00001d029201_P001	Maize	plastid	67.7	67.7
Solyc12g100160.1.1	Tomato	plastid	69.91	61.48
CDY41816	Canola	endoplasmic reticulum	52.21	56.73
Bra035618.1-P	Field mustard	endoplasmic reticulum, golgi	53.1	52.63
GSMUA_Achr4P07340_001	Banana	cytosol, mitochondrion	16.37	52.11
Zm00001d047462_P001	Maize	cytosol	65.49	49.66
GSMUA_Achr2P08570_001	Banana	mitochondrion	19.91	44.12

Protein Annotations

MapMan:17.7.2.1.6	Gene3D:3.90.930.12	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009719	GO:GO:0009735
GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009941	GO:GO:0009987	GO:GO:0016020
GO:GO:0019538	GO:GO:0019843	GO:GO:0030529	EnsemblPlantsGene:GSMUA_Achr5G16270_001	EnsemblPlants:GSMUA_Achr5P16270_001	EnsemblPlants:GSMUA_Achr5T16270_001
InterPro:IPR036789	UniProt:M0SZ06	HAMAP:MF_01365_B	PFAM:PF00347	PIRSF:PIRSF002162	PRINTS:PR00059
ScanProsite:PS00525	PANTHER:PTHR11655	PANTHER:PTHR11655:SF14	InterPro:Ribosomal_L6	InterPro:Ribosomal_L6_CS	InterPro:Ribosomal_L6_a/b-dom
InterPro:Ribosomal_L6_a/b-dom_sf	InterPro:Ribosomal_L6_bac-type	SUPFAM:SSF56053	TIGRFAMs:TIGR03654	UniParc:UPI0002956FFC	:

Description

50S ribosomal protein L6, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr5G16270_001]

Coordinates

chr5:+:14103865..14113861

Molecular Weight (calculated)

25156.8 Da

IEP (calculated)

10.544

GRAVY (calculated)

-0.346

Length

226 amino acids

Sequence
(BLAST)

001: MALVIPSIHS SCNLNSAFLG DRSRICISDA PFSRVHFLRK PVECKESRIG KRPIEVPPNV TIALDGQDLK VKGPLGELSR TYPREVKVQR DESGFLKVSK
101: AVETRRANQM HGLFRTLTDN MVVGVSKGFE KRLQLVGVGY RATLEGRDLV LNLGFSHPVR MAIPDGLQVM VEDNTRIAVI GYDKCAIGEF AAAVRKWRPP
201: EPYKGKGIKY ADEIVRRKDG KAGKKK

Best Arabidopsis Sequence Match ( AT1G05190.1 )
(BLAST)

001: MASSLVSSFQ PRSAFLGDRN VFKVSSTPFA QVGYSSKTIE CKESRIGKQP IAVPSNVTIA LEGQDLKVKG PLGELALTYP REVELTKEES GFLRVKKTVE
101: TRRANQMHGL FRTLTDNMVV GVSKGFEKKL ILVGVGYRAT VDGKELVLNL GFSHPVKMQI PDSLKVKVEE NTRITVSGYD KSEIGQFAAT VRKWRPPEPY
201: KGKGVKYSDE IVRRKEGKAG KKK

Arabidopsis Description

RPL650S ribosomal protein L6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O23049]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.