Factsheet for Bra035618.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:

plastid 4
cytosol 1
extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41816	Canola	endoplasmic reticulum	69.74	76.44
Bra032481.1-P	Field mustard	plastid	60.53	61.61
Bra015397.1-P	Field mustard	plastid	60.09	61.44
PGSC0003DMT400061282	Potato	extracellular	53.95	54.19
VIT_12s0059g02250.t01	Wine grape	plastid	53.07	53.54
KRH38479	Soybean	plastid	53.07	53.54
KRH09014	Soybean	nucleus	53.07	53.54
GSMUA_Achr5P16270_001	Banana	plastid	52.63	53.1
HORVU4Hr1G040950.1	Barley	plastid	51.75	52.21
Os03t0356300-01	Rice	nucleus	51.32	51.77
Os03t0751400-01	Rice	plastid	51.32	51.77
TraesCS4B01G157100.1	Wheat	plastid	50.88	51.33
TraesCS4D01G164500.1	Wheat	golgi	50.88	51.33
TraesCS5A01G279700.1	Wheat	golgi	50.88	51.33
TraesCS4A01G144500.1	Wheat	plastid	50.44	50.88
EER92258	Sorghum	plastid	49.56	50.0
Zm00001d029201_P001	Maize	plastid	49.56	50.0
Solyc12g100160.1.1	Tomato	plastid	53.51	47.47
Bra024469.1-P	Field mustard	cytosol, mitochondrion	17.98	40.2
Bra039612.1-P	Field mustard	cytosol, mitochondrion	17.98	40.2
Zm00001d047462_P001	Maize	cytosol	49.12	37.58

Protein Annotations

MapMan:17.7.2.1.6	Gene3D:3.90.930.12	EnsemblPlantsGene:Bra035618	EnsemblPlants:Bra035618.1	EnsemblPlants:Bra035618.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0019538
GO:GO:0019843	GO:GO:0030529	InterPro:IPR036789	UniProt:M4F3G8	PFAM:PF00347	PIRSF:PIRSF002162
PRINTS:PR00059	PANTHER:PTHR11655	PANTHER:PTHR11655:SF14	InterPro:Ribosomal_L6	InterPro:Ribosomal_L6_a/b-dom	InterPro:Ribosomal_L6_a/b-dom_sf
InterPro:Ribosomal_L6_bac-type	SUPFAM:SSF56053	TIGRFAMs:TIGR03654	TMHMM:TMhelix	UniParc:UPI000254629B	SEG:seg

Description

AT1G05190 (E=6e-046) emb2394 | emb2394 (embryo defective 2394); structural constituent of ribosome

Coordinates

chrA02:-:7236271..7237378

Molecular Weight (calculated)

25765.1 Da

IEP (calculated)

10.496

GRAVY (calculated)

-0.111

Length

228 amino acids

Sequence
(BLAST)

001: MVYLASGNVF MFAGLLLSPR TFVILWPLCF GLVFRVRVLR RQKKATQGLN HPICSSQDLK VKGPLGELAL TYPPEVELIE EDSGFLRVTK TVETRRAKEM
101: HGLFRTLTDN MVVGVSKGFE KTLELKGVGY RAMVQGKELV LNLGFSHPVK IEIPDSLKVK VDKKIILFGK GEKVKITIVI VSGYDKCEIG QFAATVRKWR
201: PAEPYKRIGV CYSDEIVHRK KGKDRKQK

Best Arabidopsis Sequence Match ( AT1G05190.1 )
(BLAST)

001: MASSLVSSFQ PRSAFLGDRN VFKVSSTPFA QVGYSSKTIE CKESRIGKQP IAVPSNVTIA LEGQDLKVKG PLGELALTYP REVELTKEES GFLRVKKTVE
101: TRRANQMHGL FRTLTDNMVV GVSKGFEKKL ILVGVGYRAT VDGKELVLNL GFSHPVKMQI PDSLKVKVEE NTRITVSGYD KSEIGQFAAT VRKWRPPEPY
201: KGKGVKYSDE IVRRKEGKAG KKK

Arabidopsis Description

RPL650S ribosomal protein L6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O23049]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.