Factsheet for PGSC0003DMT400061282

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 9
cytosol 2

Predictors

GFP

MS/MS

Papers

extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g100160.1.1	Tomato	plastid	96.04	84.82
VIT_12s0059g02250.t01	Wine grape	plastid	80.62	80.97
CDY70611	Canola	plastid	77.09	78.48
Bra032481.1-P	Field mustard	plastid	77.09	78.12
AT1G05190.1	Thale cress	plastid	76.65	78.03
CDY46838	Canola	plastid	76.65	78.03
KRH09014	Soybean	nucleus	77.53	77.88
CDY06163	Canola	plastid	76.65	77.68
CDY49511	Canola	plastid	76.21	77.58
KRH38479	Soybean	plastid	77.09	77.43
Bra015397.1-P	Field mustard	plastid	75.77	77.13
Os03t0356300-01	Rice	nucleus	72.25	72.57
Os03t0751400-01	Rice	plastid	72.25	72.57
HORVU4Hr1G040950.1	Barley	plastid	71.81	72.12
TraesCS4B01G157100.1	Wheat	plastid	71.37	71.68
TraesCS4D01G164500.1	Wheat	golgi	71.37	71.68
TraesCS5A01G279700.1	Wheat	golgi	71.37	71.68
GSMUA_Achr5P16270_001	Banana	plastid	70.93	71.24
TraesCS4A01G144500.1	Wheat	plastid	70.93	71.24
EER92258	Sorghum	plastid	70.04	70.35
Zm00001d029201_P001	Maize	plastid	69.16	69.47
CDY41816	Canola	endoplasmic reticulum	53.3	58.17
Bra035618.1-P	Field mustard	endoplasmic reticulum, golgi	54.19	53.95
Zm00001d047462_P001	Maize	cytosol	67.4	51.34
PGSC0003DMT400009003	Potato	cytosol, extracellular	18.06	40.2

Protein Annotations

MapMan:17.7.2.1.6	Gene3D:3.90.930.12	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0019843	GO:GO:0030529	InterPro:IPR036789	UniProt:M1C7B2	HAMAP:MF_01365_B
PFAM:PF00347	EnsemblPlantsGene:PGSC0003DMG401023851	PGSC:PGSC0003DMG401023851	EnsemblPlants:PGSC0003DMT400061282	PIRSF:PIRSF002162	PRINTS:PR00059
ScanProsite:PS00525	PANTHER:PTHR11655	PANTHER:PTHR11655:SF14	InterPro:Ribosomal_L6	InterPro:Ribosomal_L6_CS	InterPro:Ribosomal_L6_a/b-dom
InterPro:Ribosomal_L6_a/b-dom_sf	InterPro:Ribosomal_L6_bac-type	SUPFAM:SSF56053	TIGRFAMs:TIGR03654	UniParc:UPI0002963A35	SEG:seg

Description

EMB2394 (EMBRYO DEFECTIVE 2394) [Source:PGSC_GENE;Acc:PGSC0003DMG401023851]

Coordinates

chr12:+:60778696..60783006

Molecular Weight (calculated)

25145.8 Da

IEP (calculated)

10.862

GRAVY (calculated)

-0.417

Length

227 amino acids

Sequence
(BLAST)

001: MSSSSLTASL HTSTLRSPFV GNLNGFRVSS VAVRRVGFVR KMIECKESRI GKQPISVPSN VTLTMEGQDL KVKGPLGEMA ITYPREVKLE KDDGGILRVR
101: KAVETRRANQ MHGLFRTLTD NMVVGVSKGF EKKLQLVGVG YRATIEGKDI VLNLGFSHPV RMEIPAGLQV KVEENTRITV SGYDKSEIGQ FAASIRKWRP
201: PEPYKGKGVK YADEIVRRKE GKAGKKK

Best Arabidopsis Sequence Match ( AT1G05190.1 )
(BLAST)

001: MASSLVSSFQ PRSAFLGDRN VFKVSSTPFA QVGYSSKTIE CKESRIGKQP IAVPSNVTIA LEGQDLKVKG PLGELALTYP REVELTKEES GFLRVKKTVE
101: TRRANQMHGL FRTLTDNMVV GVSKGFEKKL ILVGVGYRAT VDGKELVLNL GFSHPVKMQI PDSLKVKVEE NTRITVSGYD KSEIGQFAAT VRKWRPPEPY
201: KGKGVKYSDE IVRRKEGKAG KKK

Arabidopsis Description

RPL650S ribosomal protein L6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O23049]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.